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Bioconductor: open software development for computational biology and bioinformatics.

Robert Gentleman,Vincent J. Carey,Douglas M. Bates,Benjamin M. Bolstad,Marcel Dettling,Sandrine Dudoit,Byron Ellis,Laurent Gautier,Yongchao Ge,Jeff Gentry,Kurt Hornik,Torsten Hothorn,Wolfgang Huber,Stefano Maria Iacus,Rafael A. Irizarry,Friedrich Leisch,Cheng Li,Martin Maechler,Anthony Rossini,Günther Sawitzki,Colin A. Smith,Gordon K. Smyth,Luke Tierney,Jean Yang,Jianhua Zhang

Bioconductor

Computer science

Software engineering

2004

The Bioconductor project is an initiative for the collaborative creation of extensible software for computational biology and bioinformatics. The goals of the project include: fostering collaborative development and widespread use of innovative software, reducing barriers to entry into interdisciplinary scientific research, and promoting the achievement of remote reproducibility of research results. We describe details of our aims and methods, identify current challenges, compare Bioconductor to other open bioinformatics projects, and provide working examples.

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“Bioconductor: open software development for computational biology and bioinformatics.” is a paper by Robert Gentleman Vincent J. Carey Douglas M. Bates Benjamin M. Bolstad Marcel Dettling Sandrine Dudoit Byron Ellis Laurent Gautier Yongchao Ge Jeff Gentry Kurt Hornik Torsten Hothorn Wolfgang Huber Stefano Maria Iacus Rafael A. Irizarry Friedrich Leisch Cheng Li Martin Maechler Anthony Rossini Günther Sawitzki Colin A. Smith Gordon K. Smyth Luke Tierney Jean Yang Jianhua Zhang published in 2004. It has an Open Access status of “hybrid”. You can read and download a PDF Full Text of this paper here.