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MOCAT2: a metagenomic assembly, annotation and profiling framework

Jens Roat Kultima,Luís Pedro Coelho,Kristoffer Forslund,Jaime Huerta-Cepas,Simone S. Li,Marja Driessen,Anita Y. Voigt,Georg Zeller,Shinichi Sunagawa,Peer Bork

Perl

Unix

Computer science

2016

MOCAT2 is a software pipeline for metagenomic sequence assembly and gene prediction with novel features for taxonomic and functional abundance profiling. The automated generation and efficient annotation of non-redundant reference catalogs by propagating pre-computed assignments from 18 databases covering various functional categories allows for fast and comprehensive functional characterization of metagenomes.MOCAT2 is implemented in Perl 5 and Python 2.7, designed for 64-bit UNIX systems and offers support for high-performance computer usage via LSF, PBS or SGE queuing systems; source code is freely available under the GPL3 license at http://mocat.embl.de: bork@embl.deSupplementary data are available at Bioinformatics online.

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“MOCAT2: a metagenomic assembly, annotation and profiling framework” is a paper by Jens Roat Kultima Luís Pedro Coelho Kristoffer Forslund Jaime Huerta-Cepas Simone S. Li Marja Driessen Anita Y. Voigt Georg Zeller Shinichi Sunagawa Peer Bork published in 2016. It has an Open Access status of “hybrid”. You can read and download a PDF Full Text of this paper here.