Lisa A. Castlebury

A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with reference to recent molecular phylogenetic analyses, and with input from diverse members of the fungal taxonomic community. The classification includes 195 taxa, down to the level of order, of which 16 are described or validated here: Dikarya subkingdom nov.; Chytridiomycota, Neocallimastigomycota phyla nov.; Monoblepharidomycetes, Neocallimastigomycetes class. nov.; Eurotiomycetidae, Lecanoromycetidae, Mycocaliciomycetidae subclass. nov.; Acarosporales, Corticiales, Baeomycetales, Candelariales, Gloeophyllales, Melanosporales, Trechisporales, Umbilicariales ords. nov. The clade containing Ascomycota and Basidiomycota is classified as subkingdom Dikarya, reflecting the putative synapomorphy of dikaryotic hyphae. The most dramatic shifts in the classification relative to previous works concern the groups that have traditionally been included in the Chytridiomycota and Zygomycota. The Chytridiomycota is retained in a restricted sense, with Blastocladiomycota and Neocallimastigomycota representing segregate phyla of flagellated Fungi. Taxa traditionally placed in Zygomycota are distributed among Glomeromycota and several subphyla incertae sedis, including Mucoromycotina, Entomophthoromycotina, Kickxellomycotina, and Zoopagomycotina. Microsporidia are included in the Fungi, but no further subdivision of the group is proposed. Several genera of ‘basal’ Fungi of uncertain position are not placed in any higher taxa, including Basidiobolus, Caulochytrium, Olpidium, and Rozella.

We present a 6-gene, 420-species maximum-likelihood phylogeny of Ascomycota, the largest phylum of Fungi. This analysis is the most taxonomically complete to date with species sampled from all 15 currently circumscribed classes. A number of superclass-level nodes that have previously evaded resolution and were unnamed in classifications of the Fungi are resolved for the first time. Based on the 6-gene phylogeny we conducted a phylogenetic informativeness analysis of all 6 genes and a series of ancestral character state reconstructions that focused on morphology of sporocarps, ascus dehiscence, and evolution of nutritional modes and ecologies. A gene-by-gene assessment of phylogenetic informativeness yielded higher levels of informativeness for protein genes (RPB1, RPB2, and TEF1) as compared with the ribosomal genes, which have been the standard bearer in fungal systematics. Our reconstruction of sporocarp characters is consistent with 2 origins for multicellular sexual reproductive structures in Ascomycota, once in the common ancestor of Pezizomycotina and once in the common ancestor of Neolectomycetes. This first report of dual origins of ascomycete sporocarps highlights the complicated nature of assessing homology of morphological traits across Fungi. Furthermore, ancestral reconstruction supports an open sporocarp with an exposed hymenium (apothecium) as the primitive morphology for Pezizomycotina with multiple derivations of the partially (perithecia) or completely enclosed (cleistothecia) sporocarps. Ascus dehiscence is most informative at the class level within Pezizomycotina with most superclass nodes reconstructed equivocally. Character-state reconstructions support a terrestrial, saprobic ecology as ancestral. In contrast to previous studies, these analyses support multiple origins of lichenization events with the loss of lichenization as less frequent and limited to terminal, closely related species.

The genus Bipolaris includes important plant pathogens with worldwide distribution. Species recognition in the genus has been uncertain due to the lack of molecular data from ex-type cultures as well as overlapping morphological characteristics. In this study, we revise the genus Bipolaris based on DNA sequence data derived from living cultures of fresh isolates, available ex-type cultures from worldwide collections and observation of type and additional specimens. Combined analyses of ITS, GPDH and TEF gene sequences were used to reconstruct the molecular phylogeny of the genus Bipolaris for species with living cultures. The GPDH gene is determined to be the best single marker for species of Bipolaris . Generic boundaries between Bipolaris and Curvularia are revised and presented in an updated combined ITS and GPDH phylogenetic tree. We accept 47 species in the genus Bipolaris and clarify the taxonomy, host associations, geographic distributions and species’ synonymies. Modern descriptions and illustrations are provided for 38 species in the genus with notes provided for the other taxa when recent descriptions are available. Bipolaris cynodontis , B. oryzae , B. victoriae , B. yamadae and B. zeicola are epi- or neotypified and a lectotype is designated for B. stenospila. Excluded and doubtful species are listed with notes on taxonomy and phylogeny. Seven new combinations are introduced in the genus Curvularia to accomodate the species of Bipolaris transferred based on the phylogenetic analysis. A taxonomic key is provided for the morphological identification of species within the genus.

The genus Diaporthe comprises pathogenic, endophytic and saprobic species with both temperate and tropical distributions. Cryptic diversification, phenotypic plasticity and extensive host associations have long complicated accurate identifications of species in this genus. The delimitation of the generic type species Diaporthe eres has been uncertain due to the lack of ex-type cultures. Species limits of D. eres and closely related species were evaluated using molecular phylogenetic analysis of eight genes including nuclear ribosomal internal transcribed spacer (ITS), partial sequences of actin (ACT), DNA-lyase (Apn2), translation elongation factor 1- α (EF1-α), beta-tubulin (TUB), calmodulin (CAL), 60s ribosomal protein L37 (FG1093) and histone-3 (HIS). The occurrence of sequence heterogeneity of ITS within D. eres is observed, which complicates the analysis and may lead to overestimation of the species diversity. The strict criteria of Genealogical Concordance Phylogenetic Species Recognition (GCPSR) were applied to resolve species boundaries based on individual and combined analyses of other seven genes except the ITS. We accept nine distinct phylogenetic species including Diaporthe alleghaniensis, D. alnea, D. bicincta, D. celastrina, D. eres, D. helicis, D. neilliae, D. pulla and D. vaccinii. Epitypes are designated for D. alnea, D. bicincta, D. celastrina, D. eres, D. helicis and D. pulla. Modern descriptions and illustrations are provided for these species. Newly designed primers are introduced to amplify and sequence the Apn2 (DNA- lyase) gene in Diaporthe. Based on phylogenetic informativeness profiles, EF1-α, Apn2 and HIS genes are recognised as the best markers for defining species in the D. eres complex.

Novel species of microfungi described in the present study include the following from South Africa: Camarosporium aloes, Phaeococcomyces aloes and Phoma aloes from Aloe, C. psoraleae, Diaporthe psoraleae and D. psoraleae-pinnatae from Psoralea, Colletotrichum euphorbiae from Euphorbia, Coniothyrium prosopidis and Peyronellaea prosopidis from Prosopis, Diaporthe cassines from Cassine, D. diospyricola from Diospyros, Diaporthe maytenicola from Maytenus, Harknessia proteae from Protea, Neofusicoccum ursorum and N. cryptoaustrale from Eucalyptus, Ochrocladosporium adansoniae from Adansonia, Pilidium pseudoconcavum from Greyia radlkoferi, Stagonospora pseudopaludosa from Phragmites and Toxicocladosporium ficiniae from Ficinia. Several species were also described from Thailand, namely: Chaetopsina pini and C. pinicola from Pinus spp., Myrmecridium thailandicum from reed litter, Passalora pseudotithoniae from Tithonia, Pallidocercospora ventilago from Ventilago, Pyricularia bothriochloae from Bothriochloa and Sphaerulina rhododendricola from Rhododendron. Novelties from Spain include Cladophialophora multiseptata, Knufia tsunedae and Pleuroascus rectipilus from soil and Cyphellophora catalaunica from river sediments. Species from the USA include Bipolaris drechsleri from Microstegium, Calonectria blephiliae from Blephilia, Kellermania macrospora (epitype) and K. pseudoyuccigena from Yucca. Three new species are described from Mexico, namely Neophaeosphaeria agaves and K. agaves from Agave and Phytophthora ipomoeae from Ipomoea. Other African species include Calonectria mossambicensis from Eucalyptus (Mozambique), Harzia cameroonensis from an unknown creeper (Cameroon), Mastigosporella anisophylleae from Anisophyllea (Zambia) and Teratosphaeria terminaliae from Terminalia (Zimbabwe). Species from Europe include Auxarthron longisporum from forest soil (Portugal), Discosia pseudoartocreas from Tilia (Austria), Paraconiothyrium polonense and P. lycopodinum from Lycopodium (Poland) and Stachybotrys oleronensis from Iris (France). Two species of Chrysosporium are described from Antarctica, namely C. magnasporum and C. oceanitesii. Finally, Licea xanthospora is described from Australia, Hypochnicium huinayensis from Chile and Custingophora blanchettei from Uruguay. Novel genera of Ascomycetes include Neomycosphaerella from Pseudopentameris macrantha (South Africa), and Paramycosphaerella from Brachystegia sp. (Zimbabwe). Novel hyphomycete genera include Pseudocatenomycopsis from Rothmannia (Zambia), Neopseudocercospora from Terminalia (Zambia) and Neodeightoniella from Phragmites (South Africa), while Dimorphiopsis from Brachystegia (Zambia) represents a novel coelomycetous genus. Furthermore, Alanphillipsia is introduced as a new genus in the Botryosphaeriaceae with four species, A. aloes, A. aloeigena and A. aloetica from Aloe spp. and A. euphorbiae from Euphorbia sp. (South Africa). A new combination is also proposed for Brachysporium torulosum (Deightoniella black tip of banana) as Corynespora torulosa. Morphological and culture characteristics along with ITS DNA barcodes are provided for all taxa.

Trichoderma aggressivum sp. nov. and T. aggressivum f. europaeum f. nov. are described. These forms cause the green mold epidemic in commercially grown Agaricus bisporus in North America and Europe, respectively. In the literature they have been reported as T. harzianum biotypes Th 4 and Th 2, respectively. They are strongly separated from their closest relative, T. harzianum, in sequences of the ITS-1 region of nuclear rDNA and an approximately 689 bp fragment of the protein coding translation elongation factor gene (EF-1α). They are distinguished from the morphologically similar T. harzianum and T. atroviride (the latter also known as biotype Th 3) most readily by rate of growth. Of these, only T. harzianum grows well and sporulates at 35 C, while T. atroviride is the slowest growing. Trichoderma aggressivum f. aggressivum and f. europaeum are effectively indistinguishable morphologically although they have subtly different growth rates at 25 C on SNA and statistically significant micromorphological differences. Based on findings of this study, descriptions of T. harzianum and T. atroviride are expanded. A key to Trichoderma species commonly found associated with commercially grown A. bisporus is provided.

Stachybotrys chartarum is an asexually reproducing fungus commonly isolated from soil and litter that is also known to occur in indoor environments and is implicated as the cause of serious illness and even death in humans. Despite its economic importance, higher level phylogenetic relationships of Stachybotrys have not been determined nor has a sexual state for S. chartarum been reported. DNA sequences from four nuclear and one mitochondrial gene were analyzed to determine the ordinal and familial placement of Stachybotrys within the Euascomycota. These data reveal that species of Stachybotrys including S. chartarum, S. albipes for which the sexual state Melanopsamma pomiformis is reported, species of Myrothecium and two other tropical hypocrealean species form a previously unknown monophyletic lineage within the Hypocreales. These results suggest that Stachybotrys and Myrothecium are closely related and share characteristics with other hypocrealean fungi. In addition, S. chartarum may have a sexual state in nature that consists of small, black, fleshy perithecia similar to Melanopsamma.

AbstractThe Sordariomycetes is one of the largest classes in the Ascomycota, and the majority of its species are characterized by perithecial ascomata and inoperculate unitunicate asci. It includes more than 600 genera with over 3000 species and represents a wide range of ecologies including pathogens and endophytes of plants, animal pathogens and mycoparasites. To test and refine the classification of the Sordariomycetes sensu CitationEriksson (2006), the phylogenetic relationship among 106 taxa from 12 orders out of 16 in the Sordariomycetes was investigated based on four nuclear loci (nSSU and nLSU rDNA, TEF and RPB2), using three species of the Leotiomycetes as outgroups. Three subclasses (i.e. Hypocreomycetidae, Sordariomycetidae and Xylariomycetidae) currently recognized in the classification are well supported with the placement of the Lulworthiales in either a basal group of the Sordariomycetes or a sister group of the Hypocreomycetidae. Except for the Microascales, our results recognize most of the orders as monophyletic groups. Melanospora species form a clade outside of the Hypocreales and are recognized as a distinct order in the Hypocreomycetidae. Glomerellaceae is excluded from the Phyllachorales and placed in Hypocreomycetidae incertae sedis. In the Sordariomycetidae, the Sordariales is a strongly supported clade and occurs within a well supported clade containing the Boliniales and Chaetosphaeriales. Aspects of morphology, ecology and evolution are discussed.KeywordsclassificationecologyevolutionHypocreomycetidaeSordariomycetidaeXylariomycetidae We thank Meredith Blackwell and Joseph W. Spatafora for suggestions in the improvement of this manuscript and Walter Gams for assistance with the Latin diagnosis. We are grateful to Robert Shoemaker for photographs of Cainia, Gaeumannomyces and Hypomyces, Gary J. Samuels for photographs of Hypocrea, and David Farr for the photograph of Valsella. We also appreciate assistance and advice with computational resources by Scott Givan and Chris Sullivan at the Center for Gene Research and Biotechnology of Oregon State University. Ben O’Rourke was great assistance to us in generating sequence data. Financial support from the National Science Foundation (DEB-0090301) to Meredith Blackwell, Joseph W. Spatafora and John W. Taylor is greatly acknowledged in initiating the collaboration and publishing this manuscript. Sequence data was generated with financial support from the National Science Foundation (DEB-0228725 and DEB-0129212) to Joseph W. Spatafora.

The ascomycete order Diaporthales is reviewed based on recent phylogenetic data that outline the families and integrate related asexual fungi. The order now consists of nine families, one of which is newly recognized as Schizoparmeaceae fam. nov., and two families are recircumscribed. Schizoparmeaceae fam. nov., based on the genus Schizoparme with its anamorphic state Pilidella and including the related Coniella, is distinguished by the threelayered ascomatal wall and the basal pad from which the conidiogenous cells originate. Pseudovalsaceae is recognized in a restricted sense, and Sydowiellaceae is circumscribed more broadly than originally conceived. Many species in the Diaporthales are saprobes, although some are pathogenic on woody plants such as Cryphonectria parasitica, the cause of chestnut blight, and agricultural crops such as canker diseases of soybean and sunflower caused by species of Diaporthe-Phomopsis in both temperate and tropical regions. Members of the Diaporthales such as Apiognomonia-Discula and Diaporthe-Phomopsis are commonly encountered as endophytes of woody plants.

Species of Diaporthe are important plant pathogens of a wide range of hosts worldwide. In the present study the species causing melanose and stem end rot diseases of Citrus spp. are revised. Three species of Diaporthe occurring on Citrus are characterised, including D. citri, D. cytosporella and D. foeniculina. Morphology and phylogenetic analyses of the complete nuclear ribosomal internal transcribed spacer regions and partial sequences of actin, beta-tubulin, calmodulin and translation elongation factor 1-α were used to resolve species on Citrus and related Diaporthe species. Diaporthe citri occurs on Citrus throughout the Citrus-growing regions of the world. Diaporthe cytosporella is found on Citrus in Europe and California (USA). Diaporthe foeniculina, including the synonym D. neotheicola, is recognised as a species with an extensive host range including Citrus. Diaporthe medusaea, a name widely used for D. citri, was determined to be a synonym of D. rudis, a species with a broad host range. Diaporthe citri is delimited based on molecular phylogenetic analysis with the inclusion of the conserved ex-type and additional collections from different geographic locations worldwide. Diaporthe cytosporella, D. foeniculina and D. rudis are epitypified, fully described and illustrated with a review of all synonyms based on molecular data and morphological studies. Newly designed primers are introduced to optimise the amplification and sequencing of calmodulin and actin genes in Diaporthe. A discussion is provided of the utility of genes and the need for multi-gene phylogenies when distinguishing species of Diaporthe or describing new species.

Phytopathogenic species of Diaporthe are associated with a number of soybean diseases including seed decay, pod and stem blight and stem canker and lead to considerable crop production losses worldwide. Accurate morphological identification of the species that cause these diseases has been difficult. In this study, we determined the phylogenetic relationships and species boundaries of Diaporthe longicolla, Diaporthe phaseolorum, Diaporthe sojae and closely related taxa. Species boundaries for this complex were determined based on combined phylogenetic analysis of five gene regions: partial sequences of calmodulin (CAL), beta-tubulin (TUB), histone-3 (HIS), translation elongation factor 1-α (EF1-α), and the nuclear ribosomal internal transcribed spacers (ITS). Phylogenetic analyses revealed that this large complex of taxa is comprised of soybean pathogens as well as species associated with herbaceous field crops and weeds. Diaporthe arctii, Diaporthe batatas, D. phaseolorum and D. sojae are epitypified. The seed decay pathogen D. longicolla was determined to be distinct from D. sojae. D. phaseolorum, originally associated with stem and leaf blight of Lima bean, was not found to be associated with soybean. A new species, Diaporthe ueckerae on Cucumis melo, is introduced with description and illustrations.

The Mushroom Council convened the Mushrooms and Health Summit in Washington, DC, on 9-10 September 2013. The proceedings are synthesized in this article. Although mushrooms have long been regarded as health-promoting foods, research specific to their role in a healthful diet and in health promotion has advanced in the past decade. The earliest mushroom cultivation was documented in China, which remains among the top global mushroom producers, along with the United States, Italy, The Netherlands, and Poland. Although considered a vegetable in dietary advice, mushrooms are fungi, set apart by vitamin B-12 in very low quantity but in the same form found in meat, ergosterol converted with UV light to vitamin D2, and conjugated linoleic acid. Mushrooms are a rare source of ergothioneine as well as selenium, fiber, and several other vitamins and minerals. Some preclinical and clinical studies suggest impacts of mushrooms on cognition, weight management, oral health, and cancer risk. Preliminary evidence suggests that mushrooms may support healthy immune and inflammatory responses through interaction with the gut microbiota, enhancing development of adaptive immunity, and improved immune cell functionality. In addition to imparting direct nutritional and health benefits, analysis of U.S. food intake survey data reveals that mushrooms are associated with higher dietary quality. Also, early sensory research suggests that mushrooms blended with meats and lower sodium dishes are well liked and may help to reduce intakes of red meat and salt without compromising taste. As research progresses on the specific health effects of mushrooms, there is a need for effective communication efforts to leverage mushrooms to improve overall dietary quality.

In advancing to one name for fungi, this paper treats generic names competing for use in the order Diaporthales (Ascomycota, Sordariomycetes) and makes a recommendation for the use or protection of one generic name among synonymous names that may be either sexually or asexually typified. A table is presented that summarizes these recommendations. Among the genera most commonly encountered in this order, Cytospora is recommended over Valsa and Diaporthe over Phomopsis. New combinations are introduced for the oldest epithet of important species in the recommended genus. These include Amphiporthe tiliae, Coryneum lanciforme, Cytospora brevispora, C. ceratosperma, C. cinereostroma, C. eugeniae, C. fallax, C. myrtagena, Diaporthe amaranthophila, D. annonacearum, D. bougainvilleicola, D. caricae-papayae, D. cocoina, D. cucurbitae, D. juniperivora, D. leptostromiformis, D. pterophila, D. theae, D. vitimegaspora, Mastigosporella georgiana, Pilidiella angustispora, P. calamicola, P. pseudogranati, P. stromatica, and P. terminaliae.

Seven new genera, 26 new species, 10 new combinations, two epitypes, one new name, and 20 interesting new host and / or geographical records are introduced in this study. New genera are: Italiofungus (based on Italiofungus phillyreae ) on leaves of Phillyrea latifolia (Italy); Neolamproconium (based on Neolamproconium silvestre ) on branch of Tilia sp. (Ukraine); Neosorocybe (based on Neosorocybe pini ) on trunk of Pinus sylvestris (Ukraine); Nothoseptoria (based on Nothoseptoria caraganae ) on leaves of Caragana arborescens (Russia); Pruniphilomyces (based on Pruniphilomyces circumscissus ) on Prunus cerasus (Russia); Vesiculozygosporium (based on Vesiculozygosporium echinosporum ) on leaves of Muntingia calabura (Malaysia); Longiseptatispora (based on Longiseptatispora curvata ) on leaves of Lonicera tatarica (Russia). New species are: Barrmaelia serenoae on leaf of Serenoa repens (USA); Chaetopsina gautengina on leaves of unidentified grass (South Africa); Chloridium pini on fallen trunk of Pinus sylvestris (Ukraine); Cadophora fallopiae on stems of Reynoutria sachalinensis (Poland); Coleophoma eucalyptigena on leaf litter of Eucalyptus sp. (Spain); Cylindrium corymbiae on leaves of Corymbia maculata (Australia); Diaporthe tarchonanthi on leaves of Tarchonanthus littoralis (South Africa); Elsinoe eucalyptorum on leaves of Eucalyptus propinqua (Australia); Exophiala quercina on dead wood of Quercus sp., (Germany); Fusarium californicum on cambium of budwood of Prunus dulcis (USA); Hypomyces gamsii on wood of Alnus glutinosa (Ukraine); Kalmusia araucariae on leaves of Araucaria bidwillii (USA); Lectera sambuci on leaves of Sambucus nigra (Russia); Melanomma populicola on fallen twig of Populus canadensis (Netherlands), Neocladosporium syringae on branches of Syringa vulgarishorus (Ukraine); Paraconiothyrium iridis on leaves of Iris pseudacorus (Ukraine); Pararoussoella quercina on branch of Quercus robur (Ukraine); Phialemonium pulveris from bore dust of deathwatch beetle (France); Polyscytalum pinicola on needles of Pinus tecunumanii (Malaysia); Acervuloseptoria fraxini on Fraxinus pennsylvanica (Russia); Roussoella arundinacea on culms of Arundo donax (Spain); Sphaerulina neoaceris on leaves of Acer negundo (Russia); Sphaerulina salicicola on leaves of Salix fragilis (Russia); Trichomerium syzygii on leaves of Syzygium cordatum (South Africa); Uzbekistanica vitis-viniferae on dead stem of Vitis vinifera (Ukraine); Vermiculariopsiella eucalyptigena on leaves of Eucalyptus sp. (Australia).

Trichoderma harzianum is a ubiquitous species in the environment and is effective in the biological control of plant-pathogenic fungi. T. harzianum has not been linked unequivocally to its sexual state nor has its phylogeny been studied in detail. It has been suggested that T. harzianum is a species complex based on the phenotypic and genotypic variability encountered. On the basis of morphological and cultural characters and DNA sequence data analysis of four genes (ITS rDNA, translation elongation factor 1-α, calmodulin, and α-actin), Hypocrea lixii was found to be the sexual state of T. harzianum. Both the asexual and sexual states of this species have wide geographic distributions. Phylogenetic analysis of four genes showed that T. harzianum/H. lixii is a cohesive group that is supported by bootstrap values higher than 95%. Principles of genealogical concordance indicated that T. harzianum/H. lixii is a complex of independent monophyletic lineages, but no diagnostic morphological distinctions were identified that justify formal taxonomic recognition for the different lineages.

The ascomycete order Diaporthales includes a number of plant pathogenic fungi such as Cryphonectria parasitica, the chestnut blight fungus, as well as many asexually reproducing fungi without known sexual states. Relationships among genera in the Diaporthales were evaluated as a basis for the recognition of families and to provide a taxonomic framework for the asexually reproducing diaporthalean fungi. Phylogenetic relationships were determined based on analyses of large subunit (LSU) nuclear ribosomal DNA (nrDNA) sequences. Within the Diaporthales 82 sequences representing 69 taxa were analyzed. Results suggest the presence of at least six major lineages within the Diaporthales recognized as the Gnomoniaceae sensu stricto, Melanconidaceae sensu stricto, Schizoparme complex including the anamorph genera Coniella and Pilidiella, Cryphonectria-Endothia complex, Valsaceae sensu stricto, and Diaporthaceae sensu stricto. In addition, six teleomorphic and anamorphic taxa fell within the Diaporthales but were not allied with any of the six lineages.

The Gnomoniaceae are characterised by ascomata that are generally immersed, solitary, without a stroma, or aggregated with a rudimentary stroma, in herbaceous plant material especially in leaves, twigs or stems, but also in bark or wood.The ascomata are black, soft-textured, thin-walled, and pseudoparenchymatous with one or more central or eccentric necks.The asci usually have a distinct apical ring.The Gnomoniaceae includes species having ascospores that are small, mostly less than 25 μm long, although some are longer, and range in septation from non-septate to one-septate, rarely multi-septate.Molecular studies of the Gnomoniaceae suggest that the traditional classification of genera based on characteristics of the ascomata such as position of the neck and ascospores such as septation have resulted in genera that are not monophyletic.In this paper the concepts of the leaf-inhabiting genera in the Gnomoniaceae are reevaluated using multiple genes, specifically nrLSU, translation elongation factor 1-alpha (tef1-α), and RNA polymerase II second largest subunit (rpb2) for 64 isolates.ITS sequences were generated for 322 isolates.Six genera of leaf-inhabiting Gnomoniaceae are defined based on placement of their type species within the multigene phylogeny.The new monotypic genus Ambarignomonia is established for an unusual species, A. petiolorum.A key to 59 species of leaf-inhabiting Gnomoniaceae is presented and 22 species of Gnomoniaceae are described and illustrated.

In eastern North America, Phomopsis cane and leaf spot, caused by Phomopsis viticola, is a foliar disease of grape but, in the Mediterranean climate of western North America, P. viticola is primarily associated with wood cankers, along with other Diaporthe spp. To determine the identity of wood-infecting Diaporthe spp. in eastern North America, 65 isolates were cultured from 190 wood-canker samples from 23 vineyards with a history of Phomopsis cane and leaf spot. Identification of 29 representative isolates was based initially on morphology, followed by phylogenetic analyses of DNA sequences of the ribosomal DNA internal transcribed spacer region, elongation factor subunit 1-α, and actin in comparison with those of type specimens. Three species were identified: P. viticola, P. fukushii, and Diaporthe eres. Inoculations onto woody stems of potted Vitis labruscana ‘Concord’ and V. vinifera ‘Chardonnay’ showed that D. eres and P. fukushii were pathogenic (mean lesion lengths of 7.4 and 7.1 mm, respectively, compared with 3.5 mm for noninoculated controls) but significantly less so than wood-canker and leaf-spot isolates of P. viticola (13.5 mm). All three species infected pruning wounds of Concord and Chardonnay in the field. Our finding of pathogenic, wood-infecting Diaporthe spp. in all 23 vineyards suggests a frequent co-occurrence of the foliar symptoms of Phomopsis cane and leaf spot and wood cankers, although the latter are not always due to P. viticola.

Molecular phylogenetic analyses of ITS-LSU rDNA sequence data demonstrate that Melanconis species occurring on Juglandaceae are phylogenetically distinct from Melanconis s.str., and therefore the new genus Juglanconis is described. Morphologically, the genus Juglanconis differs from Melanconis by light to dark brown conidia with irregular verrucae on the inner surface of the conidial wall, while in Melanconis s.str. they are smooth. Juglanconis forms a separate clade not affiliated with a described family of Diaporthales, and the family Juglanconidaceae is introduced to accommodate it. Data of macro- and microscopic morphology and phylogenetic multilocus analyses of partial nuSSU-ITS-LSU rDNA, cal, his, ms204, rpb1, rpb2, tef1 and tub2 sequences revealed four distinct species of Juglanconis. Comparison of the markers revealed that tef1 introns are the best performing markers for species delimitation, followed by cal, ms204 and tub2. The ITS, which is the primary barcoding locus for fungi, is amongst the poorest performing markers analysed, due to the comparatively low number of informative characters. Melanconium juglandinum (= Melanconis carthusiana), M. oblongum (= Melanconis juglandis) and M. pterocaryae are formally combined into Juglanconis, and J. appendiculata is described as a new species. Melanconium juglandinum and Melanconis carthusiana are neotypified and M. oblongum and Diaporthe juglandis are lectotypified. A short description and illustrations of the holotype of Melanconium ershadii from Pterocarya fraxinifolia are given, but based on morphology it is not considered to belong to Juglanconis. A key to all treated species of Juglanconis is provided.

Curvularia is an important genus whose species are widely distributed phytopathogens as well as opportunistic pathogens on human and animals. The purpose of this study is to re-evaluate the phylogenetic relationships of the species in the genus Curvularia using ITS (nuclear ribosomal internal transcribed spacer), GPDH (glyceraldehyde-3-phosphate dehydrogenase) and TEF (translation elongation factor) gene regions and to provide modern descriptions and illustrations of Curvularia australis, Curvularia buchloës, C. cymbopogonis, C. hawaiiensis, C. neoindica, C. neergaardii, C. nicotiae, C. nodulosa, C. ryleyi, and C. subpapendorfii which lack recent descriptions with details of host and distribution. A multi-gene phylogenetic tree based on ITS, GPDH and TEF gene regions is used to define species of a fresh collections obtained from various hosts and geographic locations in the world. Both human and plant associated species of Curvularia are included in the phylogenetic analysis. Some species that have previously been described from humans are herein reported from plant material as pathogens or saprobes and vice versa. Novel host associations are reported for C. asianensis, C. borreriae, C. hominis, C. muehlenbeckiae, C. trifolii and C. verruculosa.

Abstract The genus Tilletia is a group of smut fungi that infects grasses either systemically or locally. Basic differences exist between the systemically infecting species, such as the common and dwarf bunt fungi, and locally infecting species. Tilletia indica, which causes Karnal bunt of wheat, and Tilletia horrida, which causes rice kernel smut, are two examples of locally infecting species on economically important crops. However, even species on noncultivated hosts can become important when occurring as contaminants in export grain and seed shipments. In this review, we focus on T. indica and the morphologically similar but distantly related T. horrida, considering history, systematics, and biology. In addition, the controversial generic placement and evolutionary relationships of these two species are discussed in light of recent molecular studies.

Bromus tectorum, or cheatgrass, is native to Eurasia and widely invasive in western North America. By late spring, this annual plant has dispersed its seed and died; its aboveground biomass then becomes fine fuel that burns as frequently as once every 3–5 y in its invaded range. Cheatgrass has proven to be better adapted to fire there than many competing plants, but the contribution of its fungal symbionts to this adaptation had not previously been studied. In sampling cheatgrass endophytes, many fire-associated fungi were found, including Morchella in three western states (New Mexico, Idaho, and Washington). In greenhouse experiments, a New Mexico isolate of Morchella increased both the biomass and fecundity of its local cheatgrass population, thus simultaneously increasing both the probability of fire and survival of that event, via more fuel and a greater, belowground seed bank, respectively. Re-isolation efforts proved that Morchella could infect cheatgrass roots in a non-mycorrhizal manner and then grow up into aboveground tissues. The same Morchella isolate also increased survival of seed exposed to heat typical of that which develops in the seed bank during a cheatgrass fire. Phylogenetic analysis of Eurasian and North American Morchella revealed that this fire-associated mutualism was evolutionarily novel, in that cheatgrass isolates belonged to two phylogenetically distinct species, or phylotypes, designated Mel-6 and Mel-12 whose evolutionary origin appears to be within western North America. Mutualisms with fire-associated fungi may be contributing to the cheatgrass invasion of western North America.

Although significant progress has been made resolving deep branches of the fungal tree of life, many fungal systematists are interested in species-level questions to both define species and assess fungal biodiversity. Fungal genome sequences are a useful resource to systematic biologists for developing new phylogenetic markers that better represent the whole genome. Here we report primers for two newly identified single-copy protein-coding genes, FG1093 and MS204, for use with ascomycetes. Although fungi were the focus of this study, this methodological approach could be easily applied to marker development for studies of other organisms. The tests used here to assess phylogenetic informativeness are computationally rapid, require only rudimentary datasets to evaluate existing or newly developed markers, and can be applied to other non-model organisms to assist in experimental design of phylogenetic studies. Phylogenetic utility of the markers was tested in two genera, Gnomoniopsis and Ophiognomonia (Gnomoniaceae, Diaporthales). The phylogenetic performance of β-tubulin, ITS, and tef-1α was compared with FG1093 and MS204. Phylogenies inferred from FG1093 and MS204 were largely in agreement with β-tubulin, ITS, and tef-1α although some topological conflict was observed. Resolution and support for branches differed based on the combination of markers used for each genus. Based on two independent tests of phylogenetic performance, FG1093 and MS204 were determined to be equal to or better than β-tubulin, ITS, and tef-1α in resolving species relationships. Differences were found in site-specific rate of evolution in all five markers. In addition, isolates from 15 orders and 22 families of Ascomycota were screened using primers for FG1093 and MS204 to demonstrate primer utility across a wide diversity of ascomycetes. The primer sets for the newly identified genes FG1093 and MS204 and methods used to develop them are useful additions to the ascomycete systematists' toolbox.

Phomopsis stem canker causes yield reductions on sunflower (Helianthus annuus L.) on several continents, including Australia, Europe, and North America. In the United States, Phomopsis stem canker incidence has increased 16-fold in the Northern Great Plains between 2001 and 2012. Although Diaporthe helianthi was assumed to be the sole causal agent in the United States, a newly described species, D. gulyae, was found to be the primary cause of Phomopsis stem canker in Australia. To determine the identity of Diaporthe spp. causing Phomopsis stem canker in the Northern Great Plains, 275 infected stems were collected between 2010 and 2012. Phylogenetic analyses of sequences of the ribosomal DNA internal transcribed spacer region, elongation factor subunit 1-α, and actin gene regions of representative isolates, in comparison with those of type specimens, confirmed two species (D. helianthi and D. gulyae) in the United States. Differences in aggressiveness between the two species were determined using the stem-wound method in the greenhouse; overall, D. helianthi and D. gulyae did not vary significantly (P ≤ 0.05) in their aggressiveness at 10 and 14 days after inoculation. These findings indicate that both Diaporthe spp. have emerged as sunflower pathogens in the United States, and have implications on the management of this disease.

Species of Gnomoniopsis are leaf- and stem-inhabiting pyrenomycetes that infect plants in Fagaceae, Onagraceae and Rosaceae. Morphology and analyses of DNA sequences from three ribosomal DNA and protein coding regions, namely β-tubulin, translation elongation factor 1α (tef-1α) and the ITS region including ITS1, 5.8S rDNA and ITS2, were used to define species in Gnomoniopsis. Secondary structural alignment of the ITS region across four genera in Gnomoniaceae was used to increase the potential number of homologous positions in the ITS alignment. Ascospore isolates were grown from newly collected specimens. Type specimens were compared with these specimens to determine their identity. In this paper a recent concept of Gnomoniopsis is confirmed with phylogenetic resolution of additional species. Four new combinations and one new species are proposed. Nine species are described and illustrated, and a key is provided to the 13 species currently recognized in Gnomoniopsis.

Puccinia kuehnii and P. melanocephala cause orange and brown rust of sugarcane, respectively. Puccinia kuehnii has been confirmed in Asia, Australia and recently, the Caribbean basin, whereas P. melanocephala is distributed among the majority of sugarcane growing regions. Differentiating these two economically significant pathogens visually is problematic and limited to material exhibiting mature disease symptoms or spores. Partial ITS1, ITS2 and complete 5·8S sequences were generated from P. kuehnii and P. melanocephala isolates from around the world. PCR primers and dual labelled hydrolysis probes were designed for each pathogen for use in real‐time PCR and optimized using locked nucleic acids (LNA). The primers amplified DNA from their target pathogens and not from other species of Puccinia or fungal species isolated from sugarcane leaves. Optimized real‐time PCR conditions allowed the detection of 0·19 pg of P. kuehnii or P. melanocephala genomic DNA and differentiated the pathogens on sugarcane leaves prior to observing typical symptoms in the field. Primer‐introduced restriction analysis‐PCR (PIRA‐PCR) was used to detect a single nucleotide polymorphism (Pk ITS1 183A>G) in ITS1 of P. kuehnii . Allele 183A was observed in all samples, whereas 183G was detected in 52% of samples from Asia and Australia yet absent from all Caribbean basin samples. Long distance spore dispersal, dispersal through an intermediate location or improper movement of contaminated material could explain the introduction of P. kuehnii to the Western hemisphere. However, the current proliferation of the pathogen in the Americas is limited to isolates which contain only the 183A allele.

Members of the genus Plagiostoma inhabit leaves, stems, twigs, and branches of woody and herbaceous plants predominantly in the temperate Northern Hemisphere. An account of all known species of Plagiostoma including Cryptodiaporthe is presented based on analyses of morphological, cultural, and DNA sequence data. Multigene phylogenetic analyses of DNA sequences from four genes (β-tubulin, ITS, rpb2, and tef1-α) revealed eight previously undescribed phylogenetic species and an association between a clade composed of 11 species of Plagiostoma and the host family Salicaceae. In this paper these eight new species of Plagiostoma are described, four species are redescribed, and four new combinations are proposed. A key to the 25 accepted species of Plagiostoma based on host, shape, and size of perithecia, perithecial arrangement in the host, and microscopic characteristics of the asci and ascospores is provided. Disposition of additional names in Cryptodiaporthe and Plagiostoma is also discussed.

With the change to one scientific name for fungal species, numerous papers have been published with recommendations for use or protection of competing generic names in major groups of ascomycetes. Although genera in each group of fungi were carefully considered, some competing generic names were overlooked. This paper makes recommendations for additional competing genera not considered in previous papers. Chairs of relevant Working Groups of the ICTF were consulted in the development of these recommendations. A number of generic names need protection, specifically Amarenographium over Amarenomyces, Amniculicola over Anguillospora, Balansia over Ephelis, Claviceps over Sphacelia, Drepanopeziza over Gloeosporidiella and Gloeosporium, Golovinomyces over Euoidium, Holwaya over Crinium, Hypocrella over Aschersonia, Labridella over Griphosphaerioma, Metacapnodium over Antennularia, and Neonectria over Cylindrocarpon and Heliscus. The following new combinations are made: Amniculicola longissima, Atichia maunauluana, Diaporthe columnaris, D. liquidambaris, D. longiparaphysata, D. palmicola, D. tersa, Elsinoë bucidae, E. caricae, E. choisyae, E. paeoniae, E. psidii, E. zorniae, Eupelte shoemakeri, Godronia myrtilli, G. raduloides, Sarcinella mirabilis, S. pulchra, Schizothyrium jamaicense, and Trichothallus niger. Finally, one new species name, Diaporthe azadirachte, is introduced to validate an earlier name, and the conservation of Discula with a new type, D. destructiva, is recommended.

In advancing to one scientific name for each fungus species, a number of name changes are required especially for plant-associated fungi. These include species names that are not in the correct genus. For example, the generic name Elsinoë is used for fungi causing scab diseases but a number of these species were described in the asexually typified genus Sphaceloma and must be placed in Elsinoë. In other cases species names were determined to be unrelated to the type species of the genus in which they are currently placed and are placed in a more appropriate genus. For each new name the history, rationale and importance of the name is discussed. The following new combinations are made: Acanthohelicospora aurea, A. scopula, Bifusella ahmadii, Botryobasidium capitatum, B. rubiginosum, Colletotrichum magnum, Crandallia acuminata, C. antarctica, Elsinoë arachadis, E. freyliniae, E. necator, E. perseae, E. poinsettiae, E. punicae, Entyloma gibbum, Harknessia farinosa, Passalora alocasiae, Protoventuria veronicae, Pseudocercosporella ranunculi, Psiloglonium stygium, Ramularia pseudomaculiformis, Seimatosporium tostum, Thielaviopsis radicicola combs. nov., and Venturia effusa.

Many aspects of the dynamics of tropical fungal endophyte communities are poorly known, including the influence of host taxonomy, host life stage, host defence, and host geographical distance on community assembly and composition. Recent fungal endophyte research has focused on Hevea brasiliensis due to its global importance as the main source of natural rubber. However, almost no data exist on the fungal community harboured within other Hevea species or its sister genus Micrandra. In this study, we expanded sampling to include four additional Hevea spp. and two Micrandra spp., as well as two host developmental stages. Through culture-dependent and -independent (metagenomic) approaches, a total of 381 seedlings and 144 adults distributed across three remote areas within the Peruvian Amazon were sampled. Results from both sampling methodologies indicate that host developmental stage had a greater influence in community assemblage than host taxonomy or locality. Based on FunGuild ecological guild assignments, saprotrophic and mycotrophic endophytes were more frequent in adults, while plant pathogens were dominant in seedlings. Trichoderma was the most abundant genus recovered from adult trees while Diaporthe prevailed in seedlings. Potential explanations for that disparity of abundance are discussed in relation to plant physiological traits and community ecology hypotheses.

Agricultural and ecosystem biosecurity requires accurate and reliable diagnostic data provided by systems of people, technologies, and validated diagnostic assays. Biological reference collections, including living and preserved microbe culture collections, and authenticated sequence databases are essential for development and validation of robust diagnostic assays, as well as breeding for disease resistance. However, the lack of standardized requirements for long-term preservation, curation, recordkeeping, and data provenance of collections poses a significant risk to this research. Several examples of successful collections and funding models exist, but these are disparate, disconnected, and lack standards for harmonization among them. We recommend a framework for coordinated development, long-term maintenance, and accessibility of curated sets of pathogen data representing cultures and other reference material that could serve the needs of pathogen diagnostics development, population studies, and resistance breeding efforts. [Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

Effective use of diagnostic assays is essential for the early detection of plant pathogens and mitigation of potential disease impacts. Assay developers require a full understanding of the intended use of a test to address complicating factors that might be observed by an end user and limit the utility of the test and its scope of application in the field. The fitness of a test for a disease prevention application is determined by its performance characteristics, which are selected during assay design and defined during validation. This paper provides guidance to developers by standardizing the descriptions of key validation terms and concepts, including tiers that can be referenced in publications to better communicate the extent to which a test has been validated. These concepts are then applied in the broader context of a strategic approach to validation for various taxa and methods. The aim of this paper is to increase awareness of common pitfalls and gaps encountered during this process, with the goal of increased success in technology transfer. Recommendations are given for improving the efficiency and quality of test development through improved coordination among stakeholders. [Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY 4.0 International license .

Species of Trichoderma and Hypocrea that have green conidia and sterile or fertile elongations of their conidiophores are described or redescribed and their phylogenetic position explored. The described species include T. crassum, T. fasciculatum, T. fertile, T. hamatum, T. longipile, T. oblongisporum, T. pubescens, T. spirale, T. strictipile, T. strigosum, T. stromaticum, T. tomentosum, Hypocrea aureoviridis f. macrospora, H. ceramica. and H. semiorbis. Trichoderma fasciculatum originally was described from cultures from ascospores of an unidentified Hypocrea specimen; it is considered to be a synonym of T. strictipile. The remaining species of Trichoderma considered here have not been linked to teleomorphs, and the Trichoderma anamorphs of H. aureoviridis f. macrospora and H. semiorbis have not been named. Five new species of Hypocrea are described, viz. H. cremea, H. cuneispora, H. estonica, H. strictipilosa and H. surrotunda. The phylogenetic relationships of these species were inferred based on partial RPB2 and EF-1α DNA sequence data and phenotypic characteristics, including teleomorph, anamorph, colony and growth rates. Trichoderma crassum was found to be a sister species to T. virens, based on molecular sequences and phenotypic data. Hypocrea surrotunda and H. cremea, H. cuneispora and T. longipile, T. fertile and T. oblongisporum, T. tomentosum and H. atrogelatinosa, and T. hamatum and T. pubescens, respectively, were found to be closely related phylogenetically, based on RPB2 and EF-1α gene genealogies. Anamorph and teleomorph phenotype, including conidiophore elongations, phialide morphology, conidial morphology, stroma anatomy and ascospore morphology are not useful predictors of relationships. Despite the shared phenotypic characters of these Trichoderma and Hypocrea species, they are distributed between two major clades of Trichoderma/Hypocrea. Redescriptions and a key to species of Hypocrea/Trichoderma with green conidia and conidiophore elongations are presented.

The ascomycete order Diaporthales includes a number of plant pathogenic fungi such as Cryphonectria parasitica, the chestnut blight fungus, as well as many asexually reproducing fungi without known sexual states. Relationships among genera in the Diaporthales were evaluated as a basis for the recognition of families and to provide a taxonomic framework for the asexually reproducing diaporthalean fungi. Phylogenetic relationships were determined based on analyses of large subunit (LSU) nuclear ribosomal DNA (nrDNA) sequences. Within the Diaporthales 82 sequences representing 69 taxa were analyzed. Results suggest the presence of at least six major lineages within the Diaporthales recognized as the Gnomoniaceae sensu stricto, Melanconidaceae sensu stricto, Schizoparme complex including the anamorph genera Coniella and Pilidiella, Cryphonectria-Endothia complex, Valsaceae sensu stricto, and Diaporthaceae sensu stricto. In addition, six teleomorphic and anamorphic taxa fell within the Diaporthales but were not allied with any of the six lineages.

Forty isolates of Phomopsis were obtained from twigs and berries of highbush blueberry, Vaccinium corymbosum, and cranberry, Vaccinium macrocarpon, isolated primarily from plants grown in the eastern United States. They were characterized using conidiomatal morphology, conidial dimensions, colony appearance and growth rate, and sequences of ITS rDNA. Based on morphological and molecular similarities, most isolates grouped together with an authentic culture of Phomopsis vaccinii Shear. This taxon is described and illustrated. However, some Phomopsis isolates from Vaccinium differed in colony and conidiomatal morphology from P. vaccinii and, based on ITS sequences, were related to isolates of Phomopsis from diverse hosts. These isolates were excluded from P. vaccinii.

In December 2000 seed harvested from wheat (Triticum aestivum L.) cultivars SST 876 and SST 825 produced under sprinkler irrigation near Douglas, Northern Cape Province, South Africa, contained a substantial amount of partially bunted kernels. Kernel embryos contained black masses of teliospores, and in many instances the endosperm was partially degraded. Teliospores were brown to dark brown, densely echinulate, 25 to 45 μm in diameter with a short mycelial fragment on some of the spores. Hyaline, smooth-walled sterile cells were also present. Teliospores were soaked in sterile distilled water for 2 days, streaked on 2% water agar plates and incubated at 22°C in the dark. Teliospores germinated after 5 days, producing 50 to 250 filiform, nonconjugating, primary basidiospores and forcibly discharged allantoid, secondary basidiospores. Based on kernel appearance, a rotten fish odor in infected grain, teliospore morphology, and germination characteristics, the pathogen was identified as Tilletia indica Mitra, the cause of Karnal bunt (1). This morphological identification was confirmed at the USDA-ARS Systematic Botany and Mycology Laboratory, Beltsville, MD. Molecular verification of 12 South African isolates was provided by the Foreign Disease-Weed Science Research Unit at Fort Detrick, MD, using real-time polymerase chain reaction with the Tin3/Tin10 T. indica-specific primer set (2). Four additional isolates were confirmed as T. indica using the same primer set as well as ITS rDNA sequencing at the Beltsville laboratory. Reference specimens were deposited at the National Fungal Collection in Pretoria, South Africa (PREM 57214), and at Beltsville (BPI 748170). At present, the mode of introduction of T. indica into South Africa, as well as its precise distribution, is not known. It appears, however, that the pathogen is restricted to the Douglas production area in the Northern Cape where quarantine measures have been taken to contain and possibly eradicate the disease. References: (1) L. A. Castlebury and L. M. Carris. Mycologia 91:121, 1999. (2) R. D. Frederick et al. Phytopathology 90:951, 2000.

A fungus was discovered causing a progressive twig dieback on stems of Vaccinium vitis-idaea (lingonberry) in Oregon. Both morphological and molecular data suggest that the fungus belongs in Diaporthe/Phomopsis but is distinct from P. vaccinii, cause of a dieback and fruit rot of blueberry and cranberry (Vaccinium spp.). This fungus is described and illustrated as a new species, Phomopsis columnaris. It is distinguished from other species of Phomopsis by the distinctive conidiophores that consist of vertically aligned cells lining the base and sides of the conidiomata. Another species of Phomopsis described on Vaccinium, Phomopsis myrtilli, known from V. myrtillus, is redescribed and illustrated based on authentic herbarium material.

The type species of Cryptosporella, C. hypodermia, and Ophiovalsa, O. suffusa, as well as closely related species were studied using morphological, cultural, and DNA sequence characteristics. DNA sequence data from three different loci (ITS, LSU, and RPB2) suggest that C. hypodermia and O. suffusa are congeneric within the Gnomoniaceae (Diaporthales). This result is supported by similarities in perithecial, ascal and ascospore morphology, and lifestyles characterized as initially endophytic, becoming saprobic as plant tissues die. Furthermore, both type species produce Disculina anamorphs. A review of the literature indicates that the generic name Cryptosporella has priority over Ophiovalsa and its synonym Winterella sensu Reid & Booth (1987). A redescription of the genus Cryptosporella is included, as well as a description of C. hypodermia, C. suffusa, the type species of Ophiovalsa, a brief account of the other seven species accepted in Cryptosporella, and a key to species of Cryptosporella. Eight new combinations are established: C. alnicola (Fr.) L.C. Mejía & Castleb., comb. nov.; C. betulae (Tul. & C. Tul.) L.C. Mejía & Castleb., comb. nov.; C. confusa (Reid & Booth) L.C. Mejía & Castleb., comb. nov.; C. corylina (Tul. & C. Tul.) L.C. Mejía & Castleb., comb. nov.; C. femoralis (Peck) L.C. Mejía & Castleb., comb. nov.; C. suffusa (Fr.) L.C. Mejía & Castleb., comb. nov.; C. tiliae (Tul. & C. Tul.) L.C. Mejía & Castleb., comb. nov.; and C. wehmeyeriana (Reid & Booth) L.C. Mejía & Castleb., comb. nov.

In September 2007 at Masagua, Escuintla Department, Guatemala, uredial lesions that appeared different from those of brown rust were observed on a sugarcane (a complex hybrid of Saccharum L. species) cultivar (CP 72-2086) considered resistant to brown rust caused by Puccinia melanocephala Syd. & P. Syd. Samples were sent to the USDA-ARS Systematic Mycology and Microbiology Laboratory in Beltsville, MD for identification. Observed morphological features were consistent with P. kuehnii E.J. Butler and appeared similar to orange rust samples obtained from Florida in July (2). Uredinial lesions were hypophyllous, orange, and variable in size measuring 650 to 850 × 26 to 32 μm. Urediniospores were mostly obovoid to pyriform or broadly ellipsoidal, variable in size, 32 to 45 × 25 to 30 μm, and moderately echinulate with spines evenly distributed, 3 to 5 μm apart. Urediniospore walls were orange-to-light cinnamon brown, 1 to 2.5 μm thick with a pronounced apical wall and four to five equatorial pores. Telia and teliospores were not observed. The nuclear large subunit rDNA region of the rust infecting cv. CP 72-2086 (BPI 898289, GenBank Accession No. EU344904) and the ITS1, 5.8S, and ITS2 rDNA regions (GenBank Accession No. EU543434) were sequenced (1,3). DNA sequences matched sequences of P. kuehnii in GenBank and were distinct from known sequences of P. melanocephala available in GenBank (3). Thirteen cultivars were rated as to their relative resistance using severity of orange rust symptoms; CG 96–59, CG 96–135, CP 72–1312, CP 73–1547, and CP 88–1165 were resistant; CG 96–40, CG 98–121, CP 72–2086, CP 88–1508, and CP 89–2143 were intermediate; and CG 96–52, CG 98–0115, and SP 79–2233 were susceptible. Orange rust was previously reported in Florida (2), but to our knowledge, this is the second report of its occurrence in the Western Hemisphere. References: (1) M. C. Aime. Mycoscience 47:112, 2006. (2) J. C. Comstock et al. Plant Dis. 92:175, 2008. (3) E. V. Virtudazo et al. Mycoscience 42:447, 2001.

With the change to one scientific name for pleomorphic fungi, generic names typified by sexual and asexual morphs have been evaluated to recommend which name to use when two names represent the same genus and thus compete for use. In this paper, generic names in Pucciniomycotina and Ustilaginomycotina are evaluated based on their type species to determine which names are synonyms. Twenty-one sets of sexually and asexually typified names in Pucciniomycotina and eight sets in Ustilaginomycotina were determined to be congeneric and compete for use. Recommendations are made as to which generic name to use. In most cases the principle of priority is followed. However, eight generic names in the Pucciniomycotina, and none in Ustilaginomycotina, are recommended for protection: Classicula over Naiadella, Gymnosporangium over Roestelia, Helicobasidium over Thanatophytum and Tuberculina, Melampsorella over Peridermium, Milesina over Milesia, Phragmidium over Aregma, Sporobolomyces over Blastoderma and Rhodomyces, and Uromyces over Uredo. In addition, eight new combinations are made: Blastospora juruensis, B. subneurophyla, Cronartium bethelii, C. kurilense, C. sahoanum, C. yamabense, Milesina polypodii, and Prospodium crusculum combs. nov.

Rusts are economically important diseases of switchgrass (Panicum virgatum) and other Paniceae grasses. Phylogenetic analyses based on sequences of the nuc rDNA 5.8S internal transcribed spacer 2 region (ITS2), partial 28S region, and intergenic spacer region (IGS) of nuc rDNA showed that species of rust fungi infecting switchgrass are closely related within Puccinia. Variation among rbcLa sequences for the associated hosts sampled concurred with the original identifications. Five species infecting switchgrass were recognized: Puccinia graminicola (≡ Uromyces graminicola), P. pammelii (= P. panici), and the proposed new species P. amari, P. novopanici, and P. pascua. These species were distinct from P. emaculata, the species previously considered the principal rust pathogen infecting switchgrass but that was found exclusively on witchgrass (Panicum capillare) in this study. Rust fungi on switchgrass previously identified as P. emaculata were identified as the morphologically similar species P. amari, P. novopanici, and P. pammelii. The morphological species Puccinia graminicola was found to comprise three species, P. graminicola and the proposed new species P. pascua on switchgrass and P. cumminsii on Panicum sp.

Diaporthe seed decay can compromise seed quality in soybean [Glycine max (L.) Merr.] in the warm and humid production areas of the United States during crop maturation. In the current study, 45 isolates of Diaporthe were recovered from seed sampled from soybean fields affected by Diaporthe-associated diseases in eight U.S. states in 2017. The isolates obtained belonged to 10 species of Diaporthe based on morphology and phylogenetic analyses of the internal transcribed spacer, partial translation elongation factor 1-α, and β-tubulin gene sequences. The associated species included D. aspalathi, D. caulivora, D. kongii, D. longicolla, D. sojae, D. ueckerae, D. unshiuensis, and three novel fungi, D. bacilloides, D. flavescens, and D. insulistroma. One isolate each of the 10 species was examined for pathogenicity on seed of cultivar Sava under controlled conditions. Seven days postinoculation, significant differences in the percentages of decayed seeds and seedling necrosis were observed among the isolates and the noninoculated control (P < 0.0001). While the isolates of D. bacilloides, D. longicolla, and D. ueckerae caused a significantly greater percentage of decayed seeds (P < 0.0001), the isolate of D. aspalathi caused the greatest seedling necrosis (P < 0.0001). The observation of new fungi causing Diaporthe seed decay suggests the need for a more comprehensive survey in U.S. soybean producing areas since members of the genus Diaporthe appear to form a complex that causes seed decay.

A polymerase chain reaction-restriction fragment length polymorphism assay to distinguish Tilleita walkeri, a rye grass bunt fungus that occurs in the southeastern United States and Oregon, from T. indica, the Karnal bunt fungus, is described. The internal transcribed spacer (ITS) region of the ribosomal DNA repeat unit was amplified and sequenced for isolates of T. indica, T. walkeri, T. horrida, and a number of other taxa in the genus Tilletia. A unique restriction digest site in the ITS1 region of T. walkeri was identified that distinguishes it from the other taxa in the genus. Phylogenetic analysis of the taxa based on ITS sequence data revealed a close relationship between T. indica and T. walkeri, but more distant relationships between these two species and other morphologically similar taxa.

Two new genera, Neophaeosphaeria and Phaeosphaeriopsis, are described to accommodate species of Paraphaeosphaeria that are not congeneric based on morphological characters and results of 18S rDNA sequence analyses. Paraphaeosphaeria s. str. is restricted to species with two-septate ascospores and anamorphs that produce non-septate, smooth, pale brown conidia enteroblastically from phialides which have some periclinal thickening. Species in Neophaeosphaeria have 3-4-septate ascospores and anamorphs that produce ovoid to ellipsoid, non-septate, brown, verrucose or punctate conidia from percurrently proliferating conidiogenous cells. Paraphaeosphaeria barrii, P. conglomerata, P. filamentosa and P. quadriseptata are transferred to Neophaeosphaeria. At present all species in Neophaeosphaeria occur on Yucca (Agavaceae). Phaeosphaeriopsis is described for species that produce 4-5-septate ascospores. Known anamorphs produce cylindrical, 0-3-septate, brown, punctate conidia from percurrently proliferating conidiogenous cells or bacillar conidia from simple phialides. P. agavensis, P. glauco-punctata, P. nolinae and P. obtusispora are transferred to Phaeosphaeriopsis. P. amblyspora is described as a new species.

Species of Trichoderma and Hypocrea that have green conidia and sterile or fertile elongations of their conidiophores are described or redescribed and their phylogenetic position explored. The described species include T. crassum, T. fasciculatum, T. fertile, T. hamatum, T. longipile, T. oblongisporum, T. pubescens, T. spirale, T. strictipile, T. strigosum, T. stromaticum, T. tomentosum, Hypocrea aureoviridis f. macrospora, H. ceramica. and H. semiorbis. Trichoderma fasciculatum originally was described from cultures from ascospores of an unidentified Hypocrea specimen; it is considered to be a synonym of T. strictipile. The remaining species of Trichoderma considered here have not been linked to teleomorphs, and the Trichoderma anamorphs of H. aureoviridis f. macrospora and H. semiorbis have not been named. Five new species of Hypocrea are described, viz. H. cremea, H. cuneispora, H. estonica, H. strictipilosa and H. surrotunda. The phylogenetic relationships of these species were inferred based on partial RPB2 and EF-1α DNA sequence data and phenotypic characteristics, including teleomorph, anamorph, colony and growth rates. Trichoderma crassum was found to be a sister species to T. virens, based on molecular sequences and phenotypic data. Hypocrea surrotunda and H. cremea, H. cuneispora and T. longipile, T. fertile and T. oblongisporum, T. tomentosum and H. atrogelatinosa, and T. hamatum and T. pubescens, respectively, were found to be closely related phylogenetically, based on RPB2 and EF-1α gene genealogies. Anamorph and teleomorph phenotype, including conidiophore elongations, phialide morphology, conidial morphology, stroma anatomy and ascospore morphology are not useful predictors of relationships. Despite the shared phenotypic characters of these Trichoderma and Hypocrea species, they are distributed between two major clades of Trichoderma/Hypocrea. Redescriptions and a key to species of Hypocrea/Trichoderma with green conidia and conidiophore elongations are presented.

The order Tilletiales (Ustilaginomycetes, Basidiomycota) includes six genera (Conidiosporomyces, Erratomyces, Ingoldiomyces, Neovossia, Oberwinkleria and Tilletia) and approximately 150 species. All members of Tilletiales infect hosts in the grass family Poaceae with the exception of Erratomyces spp., which occur on hosts in the Fabaceae. Morphological features including teliospore ornamentation, number and nuclear condition of primary basidiospores and ability of primary basidiospores to conjugate and form an infective dikaryon were studied in conjunction with sequence analysis of the large subunit nuclear rDNA gene (nLSU). Analysis based on nLSU data shows that taxa infecting hosts in the grass subfamily Pooideae form one well supported lineage. This lineage comprises most of the reticulate-spored species that germinate to form a small number of rapidly conjugating basidiospores and includes the type species Tilletia tritici. Two tuberculate-spored species with a large number of nonconjugating basidiospores, T. indica and T. walkeri, and Ingoldiomyces hyalosporus are also included in this lineage. Most of the species included in the analysis with echinulate, verrucose or tuberculate teliospores that germinate to form a large number (>30) of nonconjugating basidiospores infect hosts in the subfamilies Panicoideae, Chloridoideae, Arundinoideae and Ehrhartoideae. This group of species is more diverse than the pooid-infecting taxa and in general do not form well supported clades corresponding to host subfamily. The results of this work suggest that morphological characters used to segregate Neovossia, Conidiosporomyces and Ingoldiomyces from Tilletia are not useful generic level characters and that all included species can be accommodated in the genus Tilletia.

Phomopsis longicolla is a major seed pathogen of soybean (Glycine max) in hot, humid environments. The objective of this study was to monitor the infection and development of P. longicolla on vegetative and reproductive tissues of six cultivars and to determine the relationship between this infection and subsequent seed infection and seed germination. Cultivars were grown for 3 years (2002 to 2004) without irrigation or with irrigation applied at pre- plus postflowering or at postflowering growth stages. P. longicolla was isolated most frequently from leaf, stem, pod, root, and seed. Diaporthe phaseolorum and three unidentified Phomopsis sp. were also isolated. Diaporthe aspalathi, which previously has not been reported on soybean, was also recovered from leaf samples. These isolates, however, were recovered very infrequently. Recovery of P. longicolla from roots was much lower than from leaves, stems, and pods in all years and irrigation environments. The recovery of P. longicolla from seed was affected by irrigation environments. Seed from irrigated plots had more P. longicolla than that from nonirrigated plots. Isolation of P. longicolla from seed was negatively correlated with percentage of seed germination in irrigated environments but not in the nonirrigated environment. Pod infection was correlated with seed infection in all three irrigation environments. Even though infection of leaves and stems increased with increasing moisture availability, such infection did not consistently correlate with seed infection. Seed germination and seed infection were negatively correlated with percent hard seed. This study provided the first demonstration of the seasonal progression of P. longicolla on soybean cultivars grown under three irrigation environments.

The phylogeny of Cryptosporella is revised to include recently discovered species. Eight species new to science are described and two new combinations are proposed, raising the total number of species accepted in Cryptosporella to 19. The species delimitation and phylogeny for Cryptosporella are determined based on analyses of DNA sequences from three genes (β-tubulin, ITS and tef1-α), comparative morphology of sexual structures on their host substrate, and host associations. The inferred phylogeny suggests that Cryptosporella has speciated primarily on Betulaceae with 16 species occurring on hosts in that plant family. The host range of most species seems to be narrow with nine species reported from a single host species or subspecies and seven species occurring on plants within a single host genus. A key to species is provided. The known distribution of Cryptosporella is expanded to mountain cloud forests of the provinces of Chiriquí in Panama and Tucumán in Argentina.

Seventy-five isolates of Phomopsis were obtained from grapes (Vitis spp.) with Phomopsis cane and leaf spot symptoms in Ohio, Michigan, New York, Pennsylvania, Maryland, and Ontario (Canada). Four isolates from California and one from Europe were also included in the study. Isolates were grouped on the basis of DNA sequences from intron regions in the translation elongation factor 1-α and calmodulin genes. According to DNA sequence comparisons with the type isolate, all isolates except two (OH-48 and CAL-5) were determined to be P. viticola, confirming the etiology of this disease in the Great Lakes region. Thirty representative isolates were evaluated for mycelial growth rate in vitro, conidial size, and pathogenicity on grapevine (Vitis interspecific hybrid ‘Seyval’) leaves and internodes. A subsample of 13 isolates was also evaluated for pathogenicity on fruit and rachises. All isolates of P. viticola caused disease on grape but differed in virulence. Among P. viticola isolates, virulence on leaves and internodes was positively correlated, and virulence on fruit and rachises was positively correlated, but there was no relationship between ratings on vegetative versus reproductive grape tissues. Some isolates that were not virulent on leaves or internodes were highly virulent on fruit and rachises and vice versa, indicating some specialization with respect to host tissues. However, differences were mostly of a quantitative nature, which makes it difficult if not impossible to assign biotypes. Among P. viticola isolates, virulence on fruit and rachises was positively correlated with mycelial growth rate in vitro. For the two isolates that were not P. viticola, the internal transcribed spacer regions of the nuclear ribosomal DNA were sequenced for identification purposes. Based on the best match available in GenBank, CAL-5 was determined to be close to Diaporthe phaseolorum, while the sequence of OH-48 matched that of Phomopsis sp. from Eucommia ulmoides in China. Both isolates had shorter alpha conidia and significantly higher mycelial growth rates than the P. viticola isolates, and were not or only slightly pathogenic to Vitis interspecific hybrid ‘Seyval’.

Species of Apiognomonia with their Discula anamorphic states in the Gnomoniaceae, Diaporthales, are known throughout the temperate Northern Hemisphere and cause diseases such as sycamore or plane tree anthracnose. The genus Apiognomonia was described based on A. veneta as the type species; however, there has been disagreement about whether or not A. veneta is a synonym of A. errabunda. Using morphological, ecological, and DNA sequence data we conclude that A. errabunda and A. veneta are different species, although very closely related; thus, A. veneta is the correct name for the type species of Apiognomonia. This conclusion is based on a combined analysis of sequences from the ITS regions of nuclear rDNA for 51 isolates from host plants of eight genera and intron regions from actin, calmodulin and translation elongation factor 1-alpha for over 25 isolates. The type species of the genus Discula is D. nervisequa, the earliest available epithet for D. platani, the lectotype of Discula. D. nervisequa is the anamorph of A. veneta. Based on an examination of the type specimen, we determined that the commonly used name for the anamorph of A. errabunda, D. umbrinella, refers to another species. A. veneta and A. errabunda including their anamorphs are described and illustrated. An account of all synonyms and excluded synonyms is presented.

In the spring of 2007, switchgrass accessions and cultivars Alamo, Kanlow, SL-93-2001, and NSL 2001-1 (lowland), Blackwell (upland), and Grenville, Falcon, and Miami (unknown ploidy levels) were sown at the East Tennessee Research and Extension Center in Knoxville for evaluation and controlled hybridizations. In July and August of 2007, uredinia were observed primarily on the upper leaf surfaces, and to a lesser extent on the undersides of leaves, of switchgrass cvs. Alamo, Blackwell, Grenville, Falcon, Kanlow, and Miami. Uredinia were observed on all cultivars and accessions in 2008. Dimensions of spores are reported as mean ± standard deviation. Uredinia were epiphyllous, adaxial, caulicolous, oblong, and the color of cinnamon brown. Urediniospores were globose to broadly ellipsoid, 26.0 ± 3.0 × 23.2 ± 2.4 μm, with a wall that was cinnamon brown, 1.5 to 2.0 μm thick, finely echinulate with three to four equatorial pores, corresponding to Puccinia emaculata Schw. (3). Abundant teliospores were isolated from Grenville, Falcon, and Blackwell, with fewer teliospores isolated from Alamo. Telia were epiphyllous, adaxial, and caulicolous, densely crowded to scattered, oblong, and dark brown to black. Teliospores were dark brown, two-celled, ellipsoid to oblong, 33.6 ± 4.8 μm long with an apical cell width of 17.5 ± 1.2 μm and basal cell width of 15.9 ± 2.5 μm. Teliospore walls were 1.5 to 2.0 μm wide at the sides and 4 to 6 μm apically. Pedicels were brown or colorless and up to approximately one length of the teliospore, 28.5 ± 7.4 μm. Teliospore morphology confirmed the identification of this rust as P. emaculata (3), which has been reported to infect upland and lowland populations of switchgrass (2). A 2,109-bp fragment containing the internal transcribed spacer (ITS) 1, 5.8S, ITS 2, and D1/D2 region of the large subunit ribosomal DNA was sequenced for a specimen on ‘Falcon’ (GenBank Accession No. EU915294 and BPI No. 878722) from two overlapping PCR fragments amplified with primers PRITS1F (L. A. Castlebury, unpublished data) and ITS4B (1) for one fragment and Rust5.8SF (L. A. Castlebury, unpublished data) and LR7 (4) for the second fragment. No sequences of P. emaculata were available for comparison; however, BLAST searches of the ITS resulted in hits to P. asparagi DC (527 of 576, 91%) and P. andropogonis Schw. (523 of 568, 92%) placing this fungus in the genus Puccinia Pers. The alternate hosts of this rust are species of the Euphorbiaceae (2,3), which are ubiquitous in this area although the aecial stage has not been observed. To our knowledge, this is the first report of P. emaculata on switchgrass in Tennessee. Given the highly susceptible response of certain varieties of switchgrass to this rust in field plots, reduction in total biomass in large acreages is likely and long-standing fields of this perennial grass will compound the problem. References: (1) M. Gardes and T. D. Bruns. Mol. Ecol. 2:113, 1993. (2) D. M. Gustafson et al. Crop Sci. 43:755, 2003. (3) P. Ramachar and G. Cummins. Mycopathol. Mycol. Appl. 25:7, 1965. (4) R. Vilgalys and M. Hester. J. Bacteriol. 172:4238, 1990.

Anthracnose caused by Colletotrichum is the most severe and widely occurring cashew disease in Brazil. Colletotrichum species are commonly found as pathogens, endophytes and occasionally as saprophytes in a wide range of hosts. The endophytic species associated with cashew trees are poorly studied. In this study, we report the Colletotrichum endophytic species associated with cashew trees in two locations in the state of Pernambuco, their prevalence in different plant organs (leaves, veins, branches and inflorescences), and compare the species in terms of pathogenicity and aggressiveness using different inoculation methods (wounded × unwounded). Six species of Colletotrichum were identified according to multilocus phylogenetic analyses, including Colletotrichum asianum, Colletotrichum chrysophilum, Colletotrichum karsti, Colletotrichum siamense, Colletotrichum theobromicola, and Colletotrichum tropicale. There were differences in the percentage of isolation in relation to the prevalence of colonized tissues and collection locations. C. tropicale was the prevalent species in both geographic areas and plant tissues collected, with no pattern of distribution of species between areas and plant tissues. All isolates were pathogenic in injured tissues of cashew plants. The best method to test the pathogenicity of Colletotrichum species was utilizing the combination of leaves + presence of wounds + conidial suspension, as it better represents the natural infection process. C. siamense was the most aggressive species.

Tilletia walkeri (Ustilaginales: Tilletiaceae) is described as a new species of partial bunt infecting Lolium multiflorum, annual ryegrass, and L. perenne, perennial ryegrass in the United States and Australia, respectively. The new species is characterized by large, tuberculate teliospores with the exospore ornamentation comprised of incompletely cerebriform ridges in surface view. Teliospores of T. walkeri are compared with those of T. indica and other similar species of Tilletia, and the issue of Neovossia versus Tilletia is discussed. A key is provided to smuts known to occur on species of Lolium.

Phomopsis shoot blight of peach is an increasingly common fungal disease in southeastern peach growing areas of the United States. A similar disease has been reported from Europe where it occurs on both peach and almond. Strains of Phomopsis were obtained from peach, asian pear and plum in the United States and from almond in Spain and Italy. Examination of the morphological, cultural and molecular characteristics of these strains showed that the Phomopsis amygdali on almond in Europe is the same as the fungus found on peach in the USA. The species of Phomopsis on plum and asian pear in the United States is different from P. amygdali.

The genus Diaporthopsis was described for species that are similar to Diaporthe but have nonseptate ascospores. The type species of Diaporthopsis is D. angelicae, an earlier name for D. nigrella. Molecular analysis of the large subunit of the nuclear ribosomal DNA places D. angelicae within a group that includes the type and many other species of Diaporthe. In addition, D. angelicae is similar in stromatal, perithecial, and centrum morphology to species of Diaporthe. Based on morphological and molecular data, Diaporthopsis angelicae is transferred to Diaporthe and the genus Diaporthopsis is considered a synonym of Diaporthe. A description and illustrations of D. angelicae are presented, and an epitype specimen is designated.

A rust of daylilies was introduced recently into North and Central America. In order to confirm the identity of this rust as Puccinia hemerocallidis, numerous specimens from Costa Rica and the United States were examined morphologically and compared with specimens from China, Japan, Russia, and Taiwan. In addition, the internal transcribed spacer (ITS) region of the ribosomal DNA was sequenced from six representative fresh specimens from the Americas and Asia. We conclude that the rust introduced into the Americas is P. hemerocallidis, for which a modern description is provided with illustrations of the uredinial and telial stages.

Frommeëlla (Phragmidiaceae, Pucciniales, Basidiomycota), which currently includes two species and is typified by F. tormentillae, causes rust on members of tribe Potentilleae (Rosaceae). The genus has been distinguished from Phragmidium on the basis of having only one germ pore per teliospore cell rather than two or three and by aecial characters. Phylogenetic analyses of both currently accepted Frommeëlla spp. with nLSU rDNA data suggest that Frommeëlla was derived from within a clade representing Phragmidium. Thus Frommeëlla should be considered to be a later generic synonym of Phragmidium. Analyses also indicate that Frommeëlla tormentillae on Potentilla species includes two taxa recognized herein as Phragmidium potentillae-canadensis and P. tormentillae. Frommeëlla mexicana on Potentilla spp. formerly classified in Duchesnea, is distinct from but sister to the other two species. Based on data regarding type specimens that were presented in a study by McCain and Hennen, the new combination Phragmidium mexicanum is proposed as the correct name for this species. Necessary studies of original material were made, and Phragmidium potentillae-canadensis is lectotpyified and epitypified. Although considered and expanded here, further examination of species boundaries and host ranges of the fungi formerly classified in Frommeëlla is warranted.

In this study evolutionary host plant patterns at ranks from order to species were analysed using spatial evolutionary and ecological vicariance analysis (SEEVA), based on a multigene phylogeny of 45 ascomycete fungal species. The objective was to understand speciation events and host associations in Ophiognomonia (Gnomoniaceae). Species of this genus are perithecial fungi that occur as endophytes, pathogens, and latent saprobes on plants in the families of Betulaceae, Fagaceae, Juglandaceae, Lauraceae, Malvaceae, Platanaceae, Rosaceae, Salicaceae, and Sapindaceae. A second objective was to determine whether speciation events are influenced by host conservatism, host specialization, or host switching at different taxonomic host ranks. Host differences between sister clades were interpreted using the divergence index (D) from the SEEVA analysis, ranging from 0 for no divergence to 1 for maximum possible divergence. Several fungal subclades showed clear patterns of host order/family conservatism (D= 1.00) for hosts in Betulaceae, Fagaceae, Juglandaceae, and Rosaceae. Clear trends of host specialization at host genus and species ranks (D = 1.00) were suggested within these host families. Independent host jumps were observed for two species at the family rank and three at the order rank. As a result of this study, host specificity and specialization is hypothesized as a mechanism that can strongly contribute to speciation patterns in fungal pathogens.

The genus Entyloma consists of more than 160 species of smut fungi distributed worldwide on dicots, with Apiaceae being one of the main host families. This study aims to clarify the systematics and phylogeny of Entyloma on Eryngium (Apiaceae) with molecular and morphological data. Eleven species from Eryngium are discussed herein. Four of them are described as new taxa: E. carmeli sp. nov. on Eryngium falcatum, E. eryngii-cretici sp. nov. on Eryngium creticum, E. eryngii-maritimi sp. nov. on Eryngium maritimum and E. ho-chunkii sp. nov. on Eryngium yuccifolium. Analysis of the internal transcribed spacer (ITS) region of rDNA is presented and supports the polyphyly of Entyloma on Eryngium.

AbstractThe small subunit ribosomal RNA genes of Plasmodiophora brassicae, an obligate endoparasite of crucifers, were amplified using the polymerase chain reaction and found to be approximately 3 kilobases (kb) long. Reverse transcriptase-PCR of the small subunit rRNA produced a fragment approximately 1.8 kb long. Insertion sequences were found at positions 567 (388 bp), 1195 (383 bp), and 1786 (442 bp) of the P. brassicae small subunit ribosomal DNA. Maximum likelihood phylogenetic analysis of the rDNA sequence suggests that P. brassicae may be more closely related to the alveolates (Dinozoa, Ciliophora, and Apicomplexa) than to any of the Fungi, Mycetozoa or Rhizopoda. Bootstrapping (30%), however, does not support this hypothesis, indicating that P. brassicae is not very closely related to any of the organisms in this alignment, including those with which it has been classified in the past.Key Words: clubrootintronsPlasmodiophoralesPlasmodiophoromycetesrRNA sequences

Summary Sirococcus is a genus of asexually reproducing fungi that includes important pathogens causing shoot blight and tip dieback of conifers. In this paper, the type species of Sirococcus, S. conigenus , is redescribed and illustrated, and an epitype designated. In addition, two new species are recognized. Sirococcus piceicola sp. nov. is described from species of Picea in Canada and Switzerland. A second new species, S. tsugae sp. nov., is known only from western North America on species of Cedrus and Tsuga. These three species can be distinguished based on morphological differences and molecular sequence data from four genes. The three species of Sirococcus on conifers vary in conidiomatal wall structure, shape of the conidiogenous cells, and shape and size of conidia.

TAXONVolume 63, Issue 4 p. 934-935 Proposals to Conserve or Reject NamesFree Access (2304) Proposal to conserve the name Diaporthe eres against twenty–one competing names (Ascomycota: Diaporthales: Diaporthaceae) Amy Rossman, Corresponding Author Amy Rossman [email protected] Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture – Agricultural Research Service, Maryland, Beltsville, 20705 U.S.A. Institute of Excellence in Fungal Research, School of Science, Mae Fah Luang University, Chiang Rai, 57100 ThailandSearch for more papers by this authorDhanushka Udayanga, Dhanushka Udayanga Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture – Agricultural Research Service, Maryland, Beltsville, 20705 U.S.A.Search for more papers by this authorLisa A. Castlebury, Lisa A. Castlebury Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture – Agricultural Research Service, Maryland, Beltsville, 20705 U.S.A.Search for more papers by this authorKevin D. Hyde, Kevin D. Hyde Institute of Excellence in Fungal Research, School of Science, Mae Fah Luang University, Chiang Rai, 57100 ThailandSearch for more papers by this author Amy Rossman, Corresponding Author Amy Rossman [email protected] Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture – Agricultural Research Service, Maryland, Beltsville, 20705 U.S.A. Institute of Excellence in Fungal Research, School of Science, Mae Fah Luang University, Chiang Rai, 57100 ThailandSearch for more papers by this authorDhanushka Udayanga, Dhanushka Udayanga Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture – Agricultural Research Service, Maryland, Beltsville, 20705 U.S.A.Search for more papers by this authorLisa A. Castlebury, Lisa A. Castlebury Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture – Agricultural Research Service, Maryland, Beltsville, 20705 U.S.A.Search for more papers by this authorKevin D. Hyde, Kevin D. Hyde Institute of Excellence in Fungal Research, School of Science, Mae Fah Luang University, Chiang Rai, 57100 ThailandSearch for more papers by this author First published: 01 August 2014 https://doi.org/10.12705/634.23Citations: 14AboutPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL Share a linkShare onEmailFacebookTwitterLinkedInRedditWechat No abstract is available for this article.Citing Literature Volume63, Issue4August 2014Pages 934-935 RelatedInformation

Orange rust, Puccinia kuehnii (W. Krüger) E.J. Butler, is an important disease of sugarcane (complex hybrid of Saccharum L. species) that causes up to 53% yield loss (3), and can eliminate sugarcane clones in breeding programs. Initially confined to the Asia-Oceania region, P. kuehnii was reported in Florida in June 2007 (2) followed by confirmation in Central and South America. Orange rust pustules were observed on August 5, 2011, in commercial sugarcane fields located in the Ecuadorian Pacific coast of South America. Pustules were observed on cultivar SP79-2233 and sugarcane clones of the CINCAE breeding program (EC06-351, EC06-340, and EC01-744). Low levels of disease incidence and severity were observed in the sugarcane germplasm. Observation under a light microscope showed typical irregularly echinulate urediniospores that were pale in color with thickened apices and paraphyses inconspicuous to absent, such as those reported to be P. kuehnii (4). DNA of urediniospores were extracted and amplified using Pk1F and PK1R qPCR primers (5). Additionally, the 28s large ribosomal subunit DNA was sequenced (1), resulting in a qPCR and 100% sequence identity with a partial sequence of the P. kuehnii 28S ribosomal RNA gene, accession GU058010 (932/932 base pairs, GenBank Accession No. KF202306). Based on urediniospore morphology, DNA amplification, and sequence analysis, the causal agent of the rust observed in Ecuador was confirmed to be P. kuehnii. Commercial varieties have not yet shown symptoms of infections. However, a survey conducted in 2011 and 2012 showed an increase of disease severity from 3% to 28% in the susceptible cv. SP79-2233. Disease symptoms were evident from stalk growth to maturity (7 to 12 months), especially at the beginning of the harvesting season. To our knowledge, this is the first report of the presence, distribution, and disease spread by the sugarcane orange rust pathogen P. kuehnii in Ecuador. References: (1) M. C. Aime. Mycoscience 47:112, 2006. (2) J. C. Comstock et al. Plant Dis. 92:175, 2008. (3) J. C. Comstock et al. ASSCT. 29:82, 2009. (4) L. Dixon and L. Castlebury. Orange Rust of Sugarcane – Puccinia kuehnii. Syst. Mycol. Microbiol. Lab. Retrieved from /sbmlweb/fungi/index.cfm, August 12, 2011. (5) N. C. Glynn et al. Plant Pathol. 59:703, 2010.

Stripe smut of grasses, Ustilago striiformis s.l., is a complex of smut fungi widely distributed over temperate and subtropical regions.The disease results in the shredding and death of leaf tissue following the rupture of elongated sori.Nearly 100 different grass species in more than 30 genera are infected by stripe smut.During the last two centuries more than 30 smut taxa have been described from members of this complex.The present study attempts to clarify the taxonomy and phylogeny of stripe smuts on grasses by analysing both morphological and molecular data.More than 200 specimens from different continents and host plants were examined.DNA was extracted from teliospores of 23 specimens from different hosts collected in Europe, Asia, and North America.The ITS and LSU regions of ribosomal DNA were amplified and used in phylogenetic analyses.The results of Maximum Parsimony and Bayesian analyses demonstrated that there are several lineages of stripe smut fungi.Analyses of morphological characters assessed with light and scanning electron microscopy showed high support for the differentiation of two clades as distinct from U. striiformis s.l., i.e., U. nunavutica sp.nov.and U. bromina.Two additional clades, U. striiformis s.str.on Holcus and a clade containing specimens from Elymus, were identified with molecular data although morphological differences were not apparent.Descriptions are given for each species.

ABSTRACT Phytopathogenic fungi in the order Diaporthales ( Sordariomycetes ) cause diseases on numerous economically important crops worldwide. In this study, we reassessed the diaporthalean species associated with prominent diseases of strawberry, namely leaf blight, leaf blotch, root rot and petiole blight, based on molecular data and morphological characters using fresh and herbarium collections. Combined analyses of four nuclear loci, 28S ribosomal DNA/large subunit rDNA ( LSU ), ribosomal internal transcribed spacers 1 and 2 with 5.8S ribosomal DNA ( ITS ), partial sequences of second largest subunit of RNA polymerase II ( RPB2 ) and translation elongation factor 1-α ( TEF1 ), were used to reconstruct a phylogeny for these pathogens. Results confirmed that the leaf blight pathogen formerly known as Phomopsis obscurans belongs in the family Melanconiellaceae and not with Diaporthe (syn. Phomopsis ) or any other known genus in the order. A new genus Paraphomopsis is introduced herein with a new combination, Paraphomopsis obscurans , to accommodate the leaf blight fungus. Gnomoniopsis fragariae comb. nov. ( Gnomoniaceae ), is introduced to accommodate Gnomoniopsis fructicola , the cause of leaf blotch of strawberry. Both of the fungi causing leaf blight and leaf blotch were epitypified. Fresh collections and new molecular data were incorporated for Paragnomonia fragariae ( Sydowiellaceae ), which causes petiole blight and root rot of strawberry and is distinct from the above taxa. An updated multilocus phylogeny for the Diaporthales is provided with representatives of currently known families.

AbstractAn improved technique for purifying Plasmodiophora brassicae resting spores from host root tissue and other contaminants is described. After extraction from macerated infected Chinese cabbage roots by a series of centrifugations in 50% sucrose and distilled water, P. brassicae resting spores were separated from other contaminants in a continuous gradient of LUDOX (40% silica suspended in NaOH, pH 9.8; DuPont)/deionized water. This purification technique produces clean suspensions of P. brassicae resting spores suitable for propagation of the organism, long-term storage, and extraction of DNA or other molecules of interest.Key Words: clubrootPlasmodiophora brassicaePlasmodiophoromycetespurification

Forty isolates of Phomopsis were obtained from twigs and berries of highbush blueberry, Vaccinium corymbosum, and cranberry, Vaccinium macrocarpon, isolated primarily from plants grown in the eastern United States. They were characterized using conidiomatal morphology, conidial dimensions, colony appearance and growth rate, and sequences of ITS rDNA. Based on morphological and molecular similarities, most isolates grouped together with an authentic culture of Phomopsis vaccinii Shear. This taxon is described and illustrated. However, some Phomopsis isolates from Vaccinium differed in colony and conidiomatal morphology from P. vaccinii and, based on ITS sequences, were related to isolates of Phomopsis from diverse hosts. These isolates were excluded from P. vaccinii.

A bunt fungus, exhibiting a spore germination pattern unique to known reticulate-spored species of Tilletia was found infecting plants in seed production fields of Festuca rubra ssp. rubra (red fescue) and F. rubra ssp. fallax (Chewing's fescue) in Oregon, and in seed lots of Lolium perenne (perennial ryegrass) from Australia and Germany. Teliospores germinated to form 20-40 uninucleate, non-conjugating basidiospores, and colonies derived from single basidiospores produced teliospores in culture. In inoculation studies using single basidiospore colonies, perennial ryegrass and L. perenne ssp. multiflorum (Italian or annual ryegrass) were infected. A phylogenetic analysis, based on ITS region rDNA, eukaryotic translation elongation factor 1 alpha, and the second largest subunit of RNA polymerase II demonstrated that the fescue and ryegrass bunts are conspecific, and distinct from known species of Tilletia.

ABSTRACT Prepatellar bursitis is typically a monomicrobial bacterial infection. A fungal cause is rarely identified. We describe a 61-year-old man who had received a renal transplant 21 months prior to presentation whose synovial fluid and surgical specimens grew Phomopsis bougainvilleicola , a pycnidial coelomycete.

Discula betulina is a foliar pathogen on birch (Betula) and Gnomonia intermedia is found on overwintered birch leaves. Perithecia of G. intermedia developed in vitro on colonies of D. betulina isolated from birch tissues in late summer, and single ascospores of G. intermedia consistently developed into colonies similar to D. betulina, producing typical D. betulina conidia. Isolates of D. betulina could be grouped into two mating types, which produced fertile perithecia of G. intermedia when mated with each other. Mycelia from single-ascospore and single-conidial isolates were inoculated onto shoots of downy birch, causing lesions and die-back from which D. betulina was consistently isolated. ITS region ribosomal DNA sequence analysis confirmed the results of the morphological and mating studies, and found that the closest known relatives of G. intermedia/D. betulina are Gnomoniella nana and Sirococcus clavigignenti-juglandacearum. The conclusion from these studies is that D. betulina is the anamorph of G. intermedia.

The two diaporthalean fungi Anisogramma virgultorum and A. anomala are biotrophic parasites. A. virgultorum causes stromatal cankers on young shoots of birch whereas A. anomala infects young branches of Corylus avellana. Although previous classifications based on morphological characteristics placed both species in the Gnomoniaceae, Diaporthales, their taxonomic position within the order and their relationship to each other required further clarification. We determined the nucleotide sequences of the ITS and partial LSU nu-rDNA regions of both species. A putative second teleomorph form of A. virgultorum, described in the literature as the 'single perithecial form', was also included in the analysis. Based on phylogenetic analyses of LSU sequences, the stromatal forms of A. virgultorum and A. anomala were part of a well-supported monophyletic sister clade to the Gnomoniaceae. The single perithecial form was placed within a clade containing representative members of the Gnomoniaceae, separate from species of Anisogramma. These results indicate that the single perithecial form of A. virgultorum actually represents an unrelated and as yet unidentified species of Gnomoniaceae. A morphological description of asci and ascospores of the three species is given. A Wilcoxon two sample test revealed that asci of the stromatal form of A. virgultorum were significantly shorter than those of the single perithecial species. Ascospores of the stromatal form of A. virgultorum were significantly shorter and wider than those of the single perithecial species.

Orange rust of sugarcane caused by Puccinia kuehnii was detected in Florida in 2007 (1). It was hypothesized that the pathogen originated from Africa because brown rust of sugarcane (synonym common rust) was introduced to the Western Hemisphere from Africa (3). Requests for rust-infected sugarcane samples were made to several western and central African countries to investigate if orange rust of sugarcane was present but as yet undetected. Orange rust had not previously been reported from western or central Africa. At Zuénoula, Ivory Coast in July 2009, symptoms of sugarcane rust were observed on cvs. SP 71-6180 and Co 997 and appeared distinct to those of brown rust of sugarcane. A year later (May 2010), rust-infected specimens of SP 71-6180 and Co 997 from the same location and also from Borotou in Ivory Coast were sent to the USDA-ARS Systematic Mycology and Microbiology Laboratory in Beltsville, MD for identification. Also in May 2010, sugarcane rust was observed at Mbandjock and Nkoteng in Cameroon on cvs. D 88172, FR 87482, and RB 72-454 and on breeding clones RCmr 08/319 and RCmr 08/1121. All specimens had orange uredinial lesions that ranged from 0.6 to 6.5 mm × 200 to 300 μm and were ellipsoidal to elongate. Urediniospores were consistent with P. kuehnii E.J. Butler observed on specimens from Florida (1). DNA isolated from all samples was successfully amplified with P. kuehnii specific primers targeting ITS1 of rDNA (2). The nuclear large subunit region of rDNA of the rust specimens from Ivory Coast (BPI 881015–881017, GenBank Accession No. HQ666888) and Cameroon (BPI 881010–881014, GenBank Accession Nos. HQ666889–HQ666891) were sequenced. DNA sequences for all were identical to sequences of P. kuehnii and distinct from known sequences of P. melanocephala available in GenBank. To our knowledge, this is the first confirmed report of orange rust of sugarcane in western and central Africa. There is evidence that brown rust of sugarcane was introduced to the Western Hemisphere from this region of Africa (3) making it also the likely source of introduction of orange rust. Further experimentation is required to confirm this hypothesis. References: (1) J. C. Comstock et al. Plant Dis. 92:175, 2008. (2) N. C. Glynn et al. Plant Pathol. 59:703. 2010. (3) H. L. Purdy et al. Plant Dis. 69:689, 1985.

North Dakota soybean production has expanded geographically, and possible short rotations with dry edible bean and pea raise concerns of pathogens (such as Diaporthe longicolla, cause of Phomopsis seed decay and stem disease of soybean) developing overlapping host ranges. To the best of our knowledge, this is the first report of D. longicolla causing stem disease on dry edible beans and dry edible peas, and stem disease on soybean in North Dakota. Its impact on dry edible beans and dry edible peas is uncertain. Accepted for publication 16 February 2015. Published 15 April 2015.

Cainiella is an ascomycete genus associated with arctic alpine plants. The systematic position of Cainiella has long been unclear, with current classifications placing the genus in either Sordariales or Xylariales. Our molecular results, based on mtSSU, ITS and nLSU rDNA data, clearly show that the genus belongs in the Sydowiellaceae (Diaporthales). The study also includes new sequences of Sydowiellaceae and contributes to a better knowledge of the phylogenetic relationships of that family.

Rust fungi infecting hollyhock and other plants in Malveae are frequently intercepted at ports of entry to the USA, particularly Puccinia malvacearum and P. heterogenea. These two species can be difficult to distinguish and can be further confused with other, less common species of microcyclic rust fungi infecting hollyhock: P. heterospora, P. lobata, P. platyspora, and P. sherardiana. Molecular phylogenetic analysis revealed that P. malvacearum and P. heterogenea are closely related, along with P. sherardiana and P. platyspora. A key to the six microcyclic Puccinia species infecting hollyhock is presented.

Papaya (Carica papaya L.) is among the most important tropical fruits produced in Brazil and is grown in nearly every state. However, several diseases can affect papaya production. Anthracnose stands out among these diseases due to high postharvest yield losses. Previous studies identified Colletotrichum magna (invalid name) and Colletotrichum gloeosporioides causing anthracnose of papaya in Brazil, but species identification was inadequate due to reliance on nuclear ribosomal internal transcribed space (nrITS) and glutamine synthetase (GS) sequences. Thus, the diversity of Colletotrichum spp. causing papaya anthracnose in Brazil may be underestimated. The present study aims to identify the Colletotrichum species associated with papaya anthracnose in Brazil based on broad geographical sampling and multilocus phylogenetic analysis, as well as to assess the prevalence and aggressiveness of the species found. Here, we report C. chrysophilum, C. fructicola, C. gloeosporioides, C. karsti, C. okinawense, C. plurivorum, C. queenslandicum, C. siamense, C. theobromicola, Colletotrichum truncatum causing papaya anthracnose in Brazil. We are also synonymizing Colletotrichum corchorum-capsularis under C. truncatum. Colletotrichum okinawense was the most prevalent species in general and in most sampled locations, and with C. truncatum represents the most aggressive species.

Global agricultural trade has accelerated the emergence and re-emergence of new plant pathogens. In the United States, the fungal pathogen Colletotrichum liriopes is still considered a foreign quarantine pathogen that affects ornamental plants (i.e., Liriope spp.). Even though this species has been reported in East Asia on various asparagaceous hosts, its first and only report in the United States was in 2018. However, that study used only ITS nrDNA for identification, and no available culture or voucher specimen was maintained. The main objective of the present study was to determine the geographic and host distribution of specimens identified as C. liriopes. To accomplish this, new and existing isolates, sequences, and genomes obtained from various hosts and geographic locations (i.e., China, Colombia, Mexico, and the United States) were compared with the ex-type of C. liriopes. Multilocus phylogenetic (ITS, Tub2, GAPDH, CHS-1, and HIS3), phylogenomic, and splits tree analyses revealed that all the studied isolates/sequences form a well-supported clade with little intraspecific variation. Morphological characterizations support these findings. The minimum spanning network, low nucleotide diversity, and negative Tajima's D from both multilocus and genomic data suggest that there was a recent movement/invasion of a few East Asian genotypes to other countries where the ornamental plants are produced (e.g., South America) and subsequently to the importing countries, such as the United States. The study reveals that the geographic and host distribution of C. liriopes sensu stricto is expanded to the United States (i.e., at least Maryland, Mississippi, and Tennessee) and on various hosts in addition to Asparagaceae and Orchidaceae. The present study produces fundamental knowledge that can be used in efforts to reduce costs or losses from agricultural trade and to expand our understanding of pathogen movement.

ABSTRACTAnthracnose caused by Colletotrichum species is one of the most important diseases of torch ginger. The disease leads to loss of aesthetic and commercial value of torch ginger stems. This study aimed to characterize Colletotrichum species associated with torch ginger anthracnose in the production areas of Pernambuco and Ceará. A total of 48 Colletotrichum isolates were identified using molecular techniques. Pathogenicity tests were performed on torch ginger with representative isolates. Phylogenetic analyses based on seven loci—DNA lyase (APN2), intergenic spacer between DNA lyase and the mating-type locus MAT1-2-1 (APN2/MAT-IGS), calmodulin (CAL), intergenic spacer between glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and a hypothetical protein (GAP2-IGS), glutamine synthetase (GS), and β-tubulin (TUB2)—revealed that they belong to five known Colletotrichum species, namely, C. chrysophilum, C. fructicola, C. siamense, C. theobromicola, and C. tropicale, and three newly discovered species, described here as C. atlanticum, C. floscerae, and C. zingibericola. Of these, C. atlanticum was the most dominant. Pathogenicity assays showed that all isolates were pathogenic to torch ginger bracts. All species are reported for the first time associated with torch ginger in Brazil. The present study contributes to the current understanding of the diversity of Colletotrichum species associated with anthracnose on torch ginger and demonstrates the importance of accurate species identification for effective disease management strategies.KEYWORDS: DiversityEtlingeraornamentalprevalencevirulence3 new taxa DISCLOSURE STATEMENTNo potential conflict of interest was reported by the author(s).SUPPLEMENTARY MATERIALSupplemental data for this article can be accessed online at https://doi.org/10.1080/00275514.2023.2227747Additional informationFundingIngrid G. Duarte, Ana G. G. Amaral, and Anthony C. Silva acknowledge “Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)” for the master’s degree scholarship. Marcos P. S. Câmara acknowledges CNPq for funding (universal number 408724/2018-8) and for the research productivity fellowship. Willie A. S. Vieira acknowledges the “Coordenação de Aperfeiçoamento Pessoal de Ensino Superior (CAPES)” and the “Programa Nacional de Pós-Doutorado/CAPES (PNPD/CAPES)” for the postdoctoral fellowships. Mention of trade names or commercial products in this publication is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the United States Department of Agriculture (USDA). The USDA is an equal opportunity provider and employer.

Uromyces ciceris-arietini has been reported on Cicer arietinum (chickpea) and Medicago polyceratia. Plants of Medicago polymorpha in Riverside and San Diego, CA were collected with severe rust caused by U. ciceris-arietini. To confirm the identification and potential new host range, a monouredinial isolate of U. ciceris-arietini from M. polymorpha was inoculated on eight accessions each of C. arietinum and M. polyceratia. All plants showed symptoms of the disease. Consequently, a range of fabaceous hosts were evaluated for their reaction to U. ciceris-arietini. New hosts for U. ciceris-arietini included 29 species of Medicago, specifically M. arabica, M. blancheana, M. ciliaris, M. constricta, M. coronata, M. doliata, M. granadensis, M. intertexta, M. italica, M. laciniata, M. lanigera, M. lesinsii, M. lupulina, M. minima, M. murex, M. muricoleptis, M. orbicularis, M. praecox, M. radiata, M. rigidula, M. rotata, M. rugosa, M. sativa, M. sauvagei, M. scutellata, M. soleirolii, M. tenoreana, M. truncatula, and M. varia, and three species of Melilotus, specifically M. italicus, M. speciosus, and M. spicatus. This isolate of U. ciceris-arietini produced no symptoms on plants in the 33 accessions tested in the genera Anthyllis, Astragalus, Lotus, and Lupinus. DNA sequences are provided to aid in the identification of this pathogen.

A shipment of Fults alkaligrass seed (Puccinellia distans) grown in Washington state containing bunted florets was intercepted by quarantine officials at China’s Tianjin Entry-Exit Quarantine and Inspection Bureau. The bunted florets were filled with irregularly shaped, reticulately ornamented teliospores that germinated in a manner characteristic of systemically infecting Tilletia spp. on grass hosts in subfamily Pooideae. Based on morphological characters and a multigene phylogenetic analysis of the ITS region rDNA, eukaryotic translation elongation factor 1 alpha and a region of the second largest subunit of RNA polymerase II including a putative intein, the Puccinellia bunt is genetically distinct from known species of Tilletia and is proposed as a new species, T. puccinelliae.

This dataset contains the digitized treatments in Plazi based on the original journal article Walker, Donald M., Castlebury, Lisa A., Rossman, Amy Y., Struwe, Lena (2014): Host conservatism or host specialization? Patterns of fungal diversification are influenced by host plant specificity in Ophiognomonia (Gnomoniaceae: Diaporthales). Biological Journal of the Linnean Society 111 (1): 1-16, DOI: 10.1111/bij.12189, URL: https://academic.oup.com/biolinnean/article-lookup/doi/10.1111/bij.12189

Phomopsis seed decay (PSD) caused by Diaporthe longicolla has been documented as part of a soybean (Glycine max) fungal disease complex that affects the quality of soybean seed. Soybean-producing countries that have not yet documented the presence of PSD impose soybean seed import restrictions to protect their soybean production. The purpose of this study was to determine the frequency of occurrence of Diaporthe spp. in Paraguay. In 2006, 16 isolates of Diaporthe were recovered for the first time from soybean seed in San Alberto, Paraguay in the south-eastern section of the country. The 16 isolates were used to inoculate mature pods harvested from greenhouse grown PSD-susceptible soybean cultivar ‘Maverick’. Among the16 isolates, six isolates (TN 214, TN 218, TN 224, TN 226, TN 227 and TN 229) caused infection on both pods and seeds within pods. Two groups of isolates were identified based on conidial types: isolates that produced only α conidia and isolates that produced both α and β conidia. The percentage of β conidia ranged from 0 to 95% for all the isolates except for TN 218, TN-222 and TN 223, which only produced α conidia. These results indicate that considerable variability exists in pathogenicity and composition of α and β spores among the 16 Diaporthe spp. isolates recovered from soybean seeds in Paraguay. In addition, these isolates may cause seed quality losses and may spread undetected to soybean production fields in Paraguay and around the world. Although the Diaporthe spp. isolates had three distinct ITS sequence types, none of the three probable species could be identified using currently available information. It is possible that these isolates represent previously unrecognized species, in addition to D. longicolla or D. phaseolorum, but additional data will be required to determine if this is the case.

Setomelanomma holmii M. Morelet, previously known only from the type specimen in France, was discovered in the U.S.A. (Kansas and Wisconsin) and Canada (Ontario) on living twigs of spruce (Picea pungens and Picea glauca). This fungus was grown from ascospores and compared with the ex-holotype culture. Morphology and ITS rDNA sequence similarities indicate that S. holmii belongs in the Pleosporales, Phaeosphaeriaceae. Sequence analysis of the SSU nrDNA places S. holmii in a clade containing members of the Leptosphaeriaceae and Phaeosphaeriaceae. Setomelanomma holmii is redescribed and illustrated based on the holotype and North American specimens.Key words: Loculoascomycetes, Phaeosphaeriaceae, Picea, Pleosporales, needle chlorosis.

TAXONVolume 67, Issue 6 p. 1209-1211 Proposals to Conserve or Reject namesFree Access (2647–2651) Proposals to conserve the name Venturia acerina against Cladosporium humile; Venturia borealis against Torula maculicola; Venturia carpophila against Fusicladium amygdali and Cladosporium americanum; Sphaerella inaequalis (Venturia inaequalis) against Spilocaea pomi, Fumago mali, Actinonema crataegi, Cladosporium dendriticum, Asteroma mali, and Scolicotrichum venosum; and Venturia pyrina against Helminthosporium pyrorum, Fusicladium virescens, F. fuscescens, Cladosporium polymorphum and Passalora pomi (Ascomycota: Dothideomycetes) Amy Rossman, Corresponding Author Amy Rossman [email protected] Department of Botany & Plant Pathology, Oregon State University, Corvallis, Oregon, 97331 U.S.A.Search for more papers by this authorLisa Castlebury, Lisa Castlebury Mycology & Nematology Genetic Diversity and Biology Laboratory, USDA-ARS, Beltsville, Maryland, 20705 U.S.A.Search for more papers by this authorBegoña Aguirre-Hudson, Begoña Aguirre-Hudson Mycology Section, Royal Botanic Gardens Kew, Richmond, Surrey, TW9 3AB United KingdomSearch for more papers by this authorReinhard Berndt, Reinhard Berndt Plant Ecological Genetics, ETH Zürich, Universitätstr. 16, 8092 Zürich, SwitzerlandSearch for more papers by this authorJacqueline Edwards, Jacqueline Edwards AgriBio, Centre for AgriBioscience, La Trobe University, Bundoora, Victoria, 3083 AustraliaSearch for more papers by this author Amy Rossman, Corresponding Author Amy Rossman [email protected] Department of Botany & Plant Pathology, Oregon State University, Corvallis, Oregon, 97331 U.S.A.Search for more papers by this authorLisa Castlebury, Lisa Castlebury Mycology & Nematology Genetic Diversity and Biology Laboratory, USDA-ARS, Beltsville, Maryland, 20705 U.S.A.Search for more papers by this authorBegoña Aguirre-Hudson, Begoña Aguirre-Hudson Mycology Section, Royal Botanic Gardens Kew, Richmond, Surrey, TW9 3AB United KingdomSearch for more papers by this authorReinhard Berndt, Reinhard Berndt Plant Ecological Genetics, ETH Zürich, Universitätstr. 16, 8092 Zürich, SwitzerlandSearch for more papers by this authorJacqueline Edwards, Jacqueline Edwards AgriBio, Centre for AgriBioscience, La Trobe University, Bundoora, Victoria, 3083 AustraliaSearch for more papers by this author First published: 01 December 2018 https://doi.org/10.12705/676.20Citations: 5AboutPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL No abstract is available for this article.Citing Literature Volume67, Issue6December 2018Pages 1209-1211 RelatedInformation

Puccinia horiana, the cause of chrysanthemum white rust, is a regulated fungal plant pathogen in the United States, while P. chrysanthemi, the cause of chrysanthemum brown rust, is a widespread but less destructive pathogen. Accurate identification is essential to enforce quarantine measures, but the two species cannot be differentiated visually in the absence of mature spores or symptoms. A multiplex real-time PCR assay was developed to detect and discriminate between P. chrysanthemi and P. horiana. Species-specific hydrolysis probes labeled with different fluorescent dyes were designed based on the rDNA internal transcribed spacer region. Seven fresh samples and 270 herbarium specimens of chrysanthemum rust were tested with the assay with results confirmed using spore morphology. P. horiana and P. chrysanthemi were accurately detected from all fresh samples, and as little as 1 pg of template DNA was reproducibly detected. Of the herbarium specimens, 99% were positive for at least one species using the multiplex assay with 7% positive for both species. This multiplex assay can discriminate between P. chrysanthemi and P. horiana and provides an additional tool for identification of P. horiana to ensure appropriate application of quarantine measures.

Surveys for Tilletia walkeri on annual ryegrass (Lolium multiflorum) were conducted during 1997 and 1998 in the southeastern United States, where suspect teliospores of the Karnal bunt fungus, Tilletia indica, were found in USDA-APHIS surveys of wheat (Triticum aestivum) seed in 1996. T. walkeri is morphologically similar to T. indica. Annual ryegrass is a common weed in wheat fields in the southeastern United States. Between April and June 1997, ryegrass seed samples were collected from 190 fields of wheat in 47 counties in Georgia and from 26 fields in 17 counties in Alabama and south-central Tennessee. In 1998, 70 samples were collected from 40 counties in the same regions of the three states. The teliospores from these samples were 23 to 45 μm in diameter (average about 33 μm) and ranged from light brown to dark reddish brown. They had coarse, widely spaced cerebriform ridges on the surface and were surrounded by a gelatinous sheath. The ryegrass bunt was identified as the recently described species T. walkeri, occurring on ryegrass seed from Australia and Oregon. In 1997, teliospores of T. walkeri were found in 13 samples from eight counties in central Georgia and from one field in Tennessee. In 1998, more teliospores and bunted seeds were found, possibly due to frequent rain in the region throughout the flowering period for ryegrass. Teliospores were found in 26/70 of the samples, and among these, only a small number of bunted seed were found in 12 of 13/70 samples. In one wheat field in Morgan County, Georgia, about 50% of the ryegrass seed collected was partially bunted, and a small percentage was completely bunted. Fields with teliospores were widely distributed and generally matched the locations where teliospores were found in APHIS wheat seed surveys in 1996 to 1998. T. walkeri occurs at very low levels on ryegrass in the Southeast and is the source of teliospores, initially identified as those of T. indica, associated with wheat seed in APHIS surveys. No bunted wheat seeds or teliospores of T. indica were found in the survey.

Salsola tragus L. (Russian thistle) is a problematic invasive weed in the western United States and a target of biological control efforts. In September of 2007, dying S. tragus plants were found along the Azov Sea at Chushka, Russia. Dying plants had irregular, necrotic, canker-like lesions near the base of the stems and most stems showed girdling and cracking. Stem lesions were dark brown and contained brown pycnidia within and extending along lesion-free sections of the stems and basal portions of leaves. Diseased stems were cut into 3- to 5-mm pieces and disinfested in 70% ethyl alcohol. After drying, stem pieces were placed into petri dishes on the surface of potato glucose agar. Numerous, dark, immersed erumpent pycnidia with a single ostiole were observed in all lesions after 2 to 3 days. Axenic cultures were sent to the Foreign Disease-Weed Science Research Unit, USDA, ARS, Ft. Detrick, MD for testing in quarantine. Conidiophores were simple, cylindrical, and 5 to 25 × 2 μm (mean 12 × 2 μm). Alpha conidia were biguttulate, one-celled, hyaline, nonseptate, ovoid, and 6.3 to 11.5 × 1.3 to 2.9 μm (mean 8.8 × 2.0 μm). Beta conidia were one-celled, filiform, hamate, hyaline, and 11.1 to 24.9 × 0.3 to 2.5 μm (mean 17.7 × 1.2 μm). The isolate was morphologically identified as a species of Phomopsis, the conidial state of Diaporthe (1). The teleomorph was not observed. A comparison with available sequences in GenBank using BLAST found 528 of 529 identities with the internal transcribed spacer (ITS) sequence of an authentic and vouchered Diaporthe eres Nitschke (GenBank DQ491514; BPI 748435; CBS 109767). Morphology is consistent with that of Phomopsis oblonga (Desm.) Traverso, the anamorph of D. eres (2). Healthy stems and leaves of 10 30-day-old plants of S. tragus were spray inoculated with an aqueous suspension of conidia (1.0 × 10 6 alpha conidia/ml plus 0.1% v/v polysorbate 20) harvested from 14-day-old cultures grown on 20% V8 juice agar. Another 10 control plants were sprayed with water and surfactant without conidia. Plants were placed in an environmental chamber at 100% humidity (rh) for 16 h with no lighting at 25°C. After approximately 24 h, plants were transferred to a greenhouse at 20 to 25°C, 30 to 50% rh, and natural light. Stem lesions developed on three inoculated plants after 14 days and another three plants after 21 days. After 70 days, all inoculated plants were diseased, four were dead, and three had more than 75% diseased tissue. No symptoms occurred on control plants. The Phomopsis state was recovered from all diseased plants. This isolate of D. eres is a potential biological control agent of S. tragus in the United States. A voucher specimen has been deposited with the U.S. National Fungus Collections (BPI 878717). Nucleotide sequences for the ribosomal ITS regions (ITS 1 and 2) were deposited in GenBank (Accession No. EU805539). To our knowledge, this is the first report of stem canker on S. tragus caused by D. eres. References: (1) B. C. Sutton. Page 569 in: The Coelomycetes. CMI, Kew, Surrey, UK, 1980. (2) L. E. Wehmeyer. The Genus Diaporthe Nitschke and its Segregates. University of Michigan Press, Ann Arbor, 1933.

HomePlant DiseaseVol. 100, No. 10First Report of European Pear Rust (Pear Trellis Rust) Caused by Gymnosporangium sabinae on Ornamental Pear (Pyrus calleryana) in Virginia PreviousNext DISEASE NOTES OPENOpen Access licenseFirst Report of European Pear Rust (Pear Trellis Rust) Caused by Gymnosporangium sabinae on Ornamental Pear (Pyrus calleryana) in VirginiaM. A. Hansen, J. Demers, M. Sutphin, K. Yoder, E. Bush, and L. CastleburyM. A. HansenSearch for more papers by this author, J. DemersSearch for more papers by this author, M. SutphinSearch for more papers by this author, K. YoderSearch for more papers by this author, E. BushSearch for more papers by this author, and L. CastleburySearch for more papers by this authorAffiliationsAuthors and Affiliations M. A. Hansen , Department of Plant Pathology, Physiology and Weed Science, Virginia Tech, Blacksburg, VA 24061 J. Demers , USDA ARS Systematic Mycology & Microbiology Lab, Beltsville, MD 20705 M. Sutphin , Virginia Cooperative Extension, Winchester, VA K. Yoder E. Bush , Department of Plant Pathology, Physiology and Weed Science, Virginia Tech, Blacksburg, VA 24061 L. Castlebury , USDA ARS Systematic Mycology & Microbiology Lab, Beltsville, MD 20705. Published Online:13 Jul 2016https://doi.org/10.1094/PDIS-03-16-0396-PDNAboutSectionsSupplemental ToolsAdd to favoritesDownload CitationsTrack Citations ShareShare onFacebookTwitterLinked InRedditEmailWechat In November 2014, leaves of ornamental pear (Pyrus calleryana, cultivar unknown) with bright orange to reddish spots typical of infection by a rust fungus were submitted to the Virginia Tech Plant Disease Clinic from a landscape in Frederick County, VA, for diagnosis. Brown aecia with bulbous bases resembling acorns, characteristic of European pear rust (pear trellis rust) caused by Gymnosporangium sabinae, were present on the lower leaf surface (Kern 1973). Two ornamental pear trees that had been in the landscape for many years were heavily infected and scattered leaf lesions were observed on other ornamental pear trees in the neighborhood. Samples of infected leaves were sent to the USDA ARS Systematic Mycology & Microbiology Lab to confirm the presence of G. sabinae and for deposit in the U. S. National Fungus Collections (specimen number BPI 893287). Morphological characters were consistent with G. sabinae. Aecia were hypophyllous, in necrotic spots, roestelioid, 2 to 5 mm high, balanoid, splitting along sides with apex intact; peridial cells (n = 20) subhyaline, verrucose to spinulose, elongated, 58 to 119 × 10 to 22 µm; aeciospores (n = 30) light brown to yellowish-brown, minutely verrucose, globose to ovoid, 22 to 29 × 26 to 35 µm, with walls 3 to 5 µm thick. DNA was extracted from aecia on one representative leaf and the ITS2 and 5′ end of the 28S rDNA regions were amplified and sequenced using the primers Rust2inv and LR6 (Aime 2006) (KU593568). Sequences were 99 to 100% identical to G. sabinae sequences in GenBank, including sequences from G. sabinae in New York (JN969962 to JN96996). G. sabinae can infect leaves, fruit, and young twigs and causes serious disease on ornamental pear and European pear (P. communis). The alternate hosts of G. sabinae are in Juniperus section Sabina, but although a Juniperus species was present in the neighborhood, no signs of rust disease or cankers were found on any of the junipers. European pear rust has been reported elsewhere in the United States (California, Connecticut, Michigan, and New York) and in Canada (British Columbia); however, it has not previously been reported in Virginia. A report from Alabama could not be confirmed. Although European pear is not widely grown commercially in Virginia, it is grown as a backyard fruit tree, and ornamental pear is common in the landscape. G. sabinae can overwinter on both its pear and juniper hosts, increasing its potential for spread. Eastern red cedar (J. virginiana) is susceptible and commonly present, and invasive volunteer seeding of ornamental pears occurs within the region; therefore, we expect the rust fungus to spread to commercial and backyard ornamental and European pears. In fact, the disease was detected in adjacent Shenandoah County in August 2015. Because this rust can cause severe defoliation, reduction in yield and dieback of pear, as well as mummification of fruit (Prokopova 2011), awareness of the presence of this disease is critical to its management on both ornamental and fruit-producing pears. This is the first report of European pear rust on ornamental pear in Virginia.References:Aime, M. C. 2006. Mycosci. 47:112. https://doi.org/10.1007/S10267-006-0281-0 Crossref, Google ScholarKern, F. D. 1973. A Revised Taxonomic Account of Gymnosporangium. Pennsylvania State Univ. Press, University Park, PA. Google ScholarProkopova, B. 2011. Scientific Works of the Institute of Horticulture. Lithuanian Res. Cent. Agric. For. Lithuanian Univ. Agric. 30:43-50. Google ScholarDetailsFiguresLiterature CitedRelated Vol. 100, No. 10 October 2016SubscribeISSN:0191-2917e-ISSN:1943-7692 Metrics Article History Issue Date: 26 Sep 2016Published: 13 Jul 2016First Look: 16 May 2016Accepted: 12 May 2016 Pages: 2166-2166 Information© 2016 The American Phytopathological SocietyCited byIdentification and characterization of two new Gymnosporangium species causing rust on Juniperus rigida in China27 July 2022 | Mycologia, Vol. 114, No. 5RUST (GYMNOSPORANGIUM SABINAE (DICKS.) G. WINTER) RESISTANCE OF PEAR VARIETIES RELEASED IN BELARUSFruit-Growing, Vol. 34Gymnosporangium fuscum (European pear rust)CABI Compendium, Vol. CABI CompendiumDANGEROUS FUNGAL DISEASE – PEAR MILDEW (GYMNOSPORANGIUM SABINAE (DICKS.) G. WINTER)Fruit-Growing, Vol. 33Species diversity, taxonomy, and phylogeny of Gymnosporangium in China2 October 2020 | Mycologia, Vol. 112, No. 5

Switchgrass seed samples of ‘Blackwell’ and ‘Alamo’ from Bailey County, TX were examined for bunt fungi. Fourteen completely bunted seeds of ‘Blackwell’ and four of ‘Alamo’ were found. No partially bunted seeds were found. Bunted seeds were darker and occasionally slightly swollen relative to noninfected seeds. Teliospores were globose to subglobose, 21 to 28 × 20 to 27 μm in diameter, dark reddish brown to nearly black, with blunt warts 1 to 1.8 μm long, enveloped in a hyaline sheath, and often with a short apiculus. Sterile cells were globose to subglobose, 17.5 to 22 μm, with smooth, laminated walls as much as 2.6 μm thick, and often with a short apiculus. This bunt was identified as Tilletia pulcherrima Ellis &amp; Galloway on the basis of host and spore morphology (2). The internal transcribed spacer regions 1 and 2, including the 5.8S rDNA, were sequenced from bunted ‘Blackwell’ seeds (GenBank Accession No. EU915293, WSP 71501). The sequence was distinct from all Tilletia sequences in GenBank, including Tilletia barclayana (Bref.) Sacc. &amp; Syd. on Panicum obtusum Kunth (GenBank Accession No. AF 310169) (1). To our knowledge, this is the first report of T. pulcherrima from switchgrass in Texas. Plant pathologists and regulatory officials should be aware of the potential for misidentification of T. pulcherrima as T. indica Mitra, the Karnal bunt pathogen of wheat that has similar spores, occurs in Texas, and has quarantine status. References: (1) R. Durán and G. W. Fischer. The Genus Tilletia, Washington State University, Pullman, WA, 1961. (2) K. Vánky, Mycotaxon 91:217, 2005.

Acroptilon repens (L.) DC. (Russian knapweed, synonym Centaurea repens L., family Asteraceae) is becoming a noxious weed in wheat fields in Turkey. Because it is also an invasive weed in the northwestern United States, A. repens is a target of biological control efforts. In the summer of 2002, approximately 20 dying A. repens plants were found on a roadside near Cankiri, Turkey (40°21′41″N, 33°31′8″E, elevation 699 m). No healthy plants were found in the immediate area. Dying plants had irregular, charcoal-colored, necrotic lesions at the leaf tips and margins, and frequently, whole leaves and plants were necrotic. Symptomatic leaves were air-dried and sent to the Foreign Disease-Weed Science Research Unit, USDA/ARS, Fort Detrick, MD. There, diseased leaves were surface-disinfested and placed on moist, filter paper in petri dishes. Pycnidia producing one-celled hyaline conidia were observed after 4 to 5 days. Internal transcribed spacer regions 1 and 2, including the 5.8S ribosomal DNA, were sequenced for isolate 02-059 (GenBank Accession No. AY367351). This sequence was identical to sequences in GenBank from six well-characterized strains of Phoma exigua Desmaz (1). Morphology was also consistent with P. exigua (2) with the exception that material grown on alfalfa twigs produced pycnidia with 1 to 4 ostioles with necks as much as 80 μm long. Typically, pycnidia of P. exigua produced on agar have 1 to 2 ostioles that lack necks. Conidial dimensions on alfalfa were 4.1 to 7.6 × 1.7 to 3.2 μm (average 5.5 × 2.4 μm). Images of the fungus are located at http://nt.ars-grin.gov under the section ‘Fungi Online’. Stems and leaves of 20 3-week-old plants were spray inoculated with an aqueous suspension (1 × 10 7 conidia per ml) of conidia harvested from 25-day-old cultures grown on acidified potato dextrose agar, and placed in an environmental chamber at 25°C with constant light and continuous dew for 3 days. Plants were then moved to a greenhouse bench and watered twice daily. After 6 days, symptoms were observed on all plants. Once symptoms had progressed to the midveins of the leaves, the disease progressed rapidly on the plants, indicating the possibility of systemic infection or systemic movement of toxins. Phoma exigua was reisolated from the stems, petioles, and leaves of all inoculated plants. In a separate test, 12 plants were inoculated as described above, and 8 additional plants were sprayed with water only. After inoculation, plants were handled as described above. The first lesions developed after 3 days on all except the youngest leaves of inoculated plants. After 10 days, three inoculated plants were dead, and all other inoculated plants had large necrotic lesions. No symptoms developed on control plants. This isolate of Phoma exigua is a destructive pathogen on A. repens, and severe disease can be produced by inoculation of foliage with an aqueous suspension of conidia. These characteristics make this isolate of P. exigua a potential candidate for biological control of this weed in Turkey and the United States. To our knowledge, this is the first report of P. exigua on A. repens in Turkey. A voucher specimen has been deposited with the U.S. National Fungus Collections (BPI 843350). References: (1) E. C. A. Abeln et al. Mycol. Res. 106:419, 2002. (2) H. A. Van der Aa et al. Persoonia 17:435, 2000.

Honckenya peploides (L.) Ehrh. (Caryophyllaceae), commonly known as seabeach sandwort, is a species of special concern in Connecticut (4). Nearly an entire population of H. peploides in New London County, CT was found to be severely infected by the aecial stage of a rust fungus in June of 2008. Representative plants in the population were infected with aecia on more than 50% of the leaves. Aecia were amphigenous, gregarious, cupulate, pulverulent, yellowish, and erumpent with a hyaline to whitish peridium having a lacerate, somewhat recurved margin. Peridial cells were rhomboidal, 26 to 31 × 25 to 29 μm, smooth to finely verrucose. Aeciospores were globose to ellipsoid, 23.5 to 29 × 20.5 to 22 μm, hyaline to pale yellowish with a verrucose surface and hyaline walls 1.5 to 2 μm thick. Morphological characters corresponded to a reference specimen (BPI 000105) of the aecial stage of Uromyces acuminatus Arthur from Nova Scotia, as well as published descriptions (1,2). Subsequently, telia of U. acuminatus were discovered on Spartina patens (Aiton) Muhl. (Poaceae) in May of 2009 in New London County, CT. Telia were adaxial, intercostal, scattered to gregarious, linear and at times elongate, dark brown to black, pulverulent, and erumpent. Teliospores were obovate to ellipsoid with rounded to acuminate apices rarely having two points, 30 to 41 × 19 to 24 μm, with a smooth surface and brownish-yellow to brown walls 9 to 14 μm thick at apex, which is sometimes paler, and 1 to 3 μm thick laterally, pedicels with a portion persisting on the teliospore that is up to 82 μm long and brownish-yellow. The ITS2 and 5' region of the 28S rDNA (998 bp) from the rust on H. peploides (GenBank Accession No. GU109282, BPI 879300) and the rust on S. patens (GenBank Accession No. GU058008, BPI 879285B) were sequenced to confirm the identification of U. acuminatus on H. peploides with the resulting sequences identical. U. acuminatus is widespread in the eastern United States and Canada (1-3). The telial stage is found on Spartina spp., while the aecial stage is found on numerous taxa including members of the Asparagaceae (formerly Ruscaceae, Liliaceae), Caryophyllaceae, Polemoniaceae, and Primulaceae (1-3). Puccinia arenariae (Schumach.) G. Winter, previously reported from H. peploides (4), is microcyclic and stages 0, I, and II are unknown. To our knowledge, this is the first report of U. acuminatus on the genus Honckenya. This report has significance to natural resource conservation managers and scientists working in endangered plant habitats because H. peploides and H. peploides subsp. robusta are listed as plants of special concern or endangered/extirpated in Connecticut, Maryland, New Hampshire, and Rhode Island (4). References: (1) J. C. Arthur. Order Uredinales. N. Am. Flora 7(3):161, 1912. (2) G. B. Cummins. The Rust Fungi of Cereals, Grasses and Bamboos. Springer-Verlag, New York, 1971. (3) D. F. Farr and A. Y. Rossman. Fungal Databases. Systematic Mycology and Microbiology Laboratory. Online publication. ARS, USDA, 2009. (4) USDA, NRCS. The PLANTS Database. Online publication. National Plant Data Center, Baton Rouge, LA, 2009.

The causal agent of flag smut of wheat is currently subject to strict quarantine regulations in many countries and is believed to have a wide host range on wild and cultivated grasses. This fungus has been classified as both Urocystis agropyri and Urocystis tritici. Urocystis agropyri was first described from Elymus repens in Germany and U. tritici was first described from Triticum vulgare (= T. aestivum ). In 1953, G. W. Fischer placed U. tritici and a large number of other Urocystis species in synonymy with U. agropyri . The present study is the first attempt to clarify the taxonomy and phylogeny of flag smut pathogens of grasses using molecular analyses. Three loci, the internal transcribed spacer ( ITS ) region of rDNA , the RNA polymerase II subunit 2 ( RPB 2), and translation elongation factor ( TEF ) protein‐coding regions were used for phylogenetic reconstruction to determine the species boundaries of 24 Urocystis specimens from triticoid hosts. Results indicate that there are several distinct lineages of flag smut pathogens, including the causal agent of flag smut of wheat, which is supported as a separate species, U. tritici . Sequences from specimens on E. repens , which are retained as U. agropyri , grouped in a clade distinct from those on wheat and rye. The closest relatives of U. tritici were found to be U. hispanica from Aegilops and Urocystis sp. from Thinopyrum junceiforme and Elymus trachycaulis . Recognition that U. tritici is genetically distinct from U. agropyri sensu stricto will impact regulatory policy and facilitate the development of diagnostic tests.