Jennifer E. Smith

The cycles of the key nutrient elements nitrogen (N) and phosphorus (P) have been massively altered by anthropogenic activities. Thus, it is essential to understand how photosynthetic production across diverse ecosystems is, or is not, limited by N and P. Via a large-scale meta-analysis of experimental enrichments, we show that P limitation is equally strong across these major habitats and that N and P limitation are equivalent within both terrestrial and freshwater systems. Furthermore, simultaneous N and P enrichment produces strongly positive synergistic responses in all three environments. Thus, contrary to some prevailing paradigms, freshwater, marine and terrestrial ecosystems are surprisingly similar in terms of N and P limitation.

The conservation status of 845 zooxanthellate reef-building coral species was assessed by using International Union for Conservation of Nature Red List Criteria. Of the 704 species that could be assigned conservation status, 32.8% are in categories with elevated risk of extinction. Declines in abundance are associated with bleaching and diseases driven by elevated sea surface temperatures, with extinction risk further exacerbated by local-scale anthropogenic disturbances. The proportion of corals threatened with extinction has increased dramatically in recent decades and exceeds that of most terrestrial groups. The Caribbean has the largest proportion of corals in high extinction risk categories, whereas the Coral Triangle (western Pacific) has the highest proportion of species in all categories of elevated extinction risk. Our results emphasize the widespread plight of coral reefs and the urgent need to enact conservation measures.

Ecology Letters (2011) 14 : 852–862 Abstract Synergistic interactions between multiple limiting resources are common, highlighting the importance of co‐limitation as a constraint on primary production. Our concept of resource limitation has shifted over the past two decades from an earlier paradigm of single‐resource limitation towards concepts of co‐limitation by multiple resources, which are predicted by various theories. Herein, we summarise multiple‐resource limitation responses in plant communities using a dataset of 641 studies that applied factorial addition of nitrogen (N) and phosphorus (P) in freshwater, marine and terrestrial systems. We found that more than half of the studies displayed some type of synergistic response to N and P addition. We found support for strict definitions of co‐limitation in 28% of the studies: i.e. community biomass responded to only combined N and P addition, or to both N and P when added separately. Our results highlight the importance of interactions between N and P in regulating primary producer community biomass and point to the need for future studies that address the multiple mechanisms that could lead to different types of co‐limitation.

The effect of Ocean Acidification (OA) on marine biota is quasi-predictable at best. While perturbation studies, in the form of incubations under elevated pCO2, reveal sensitivities and responses of individual species, one missing link in the OA story results from a chronic lack of pH data specific to a given species' natural habitat. Here, we present a compilation of continuous, high-resolution time series of upper ocean pH, collected using autonomous sensors, over a variety of ecosystems ranging from polar to tropical, open-ocean to coastal, kelp forest to coral reef. These observations reveal a continuum of month-long pH variability with standard deviations from 0.004 to 0.277 and ranges spanning 0.024 to 1.430 pH units. The nature of the observed variability was also highly site-dependent, with characteristic diel, semi-diurnal, and stochastic patterns of varying amplitudes. These biome-specific pH signatures disclose current levels of exposure to both high and low dissolved CO2, often demonstrating that resident organisms are already experiencing pH regimes that are not predicted until 2100. Our data provide a first step toward crystallizing the biophysical link between environmental history of pH exposure and physiological resilience of marine organisms to fluctuations in seawater CO2. Knowledge of this spatial and temporal variation in seawater chemistry allows us to improve the design of OA experiments: we can test organisms with a priori expectations of their tolerance guardrails, based on their natural range of exposure. Such hypothesis-testing will provide a deeper understanding of the effects of OA. Both intuitively simple to understand and powerfully informative, these and similar comparative time series can help guide management efforts to identify areas of marine habitat that can serve as refugia to acidification as well as areas that are particularly vulnerable to future ocean change.

Effective conservation requires rigorous baselines of pristine conditions to assess the impacts of human activities and to evaluate the efficacy of management. Most coral reefs are moderately to severely degraded by local human activities such as fishing and pollution as well as global change, hence it is difficult to separate local from global effects. To this end, we surveyed coral reefs on uninhabited atolls in the northern Line Islands to provide a baseline of reef community structure, and on increasingly populated atolls to document changes associated with human activities. We found that top predators and reef-building organisms dominated unpopulated Kingman and Palmyra, while small planktivorous fishes and fleshy algae dominated the populated atolls of Tabuaeran and Kiritimati. Sharks and other top predators overwhelmed the fish assemblages on Kingman and Palmyra so that the biomass pyramid was inverted (top-heavy). In contrast, the biomass pyramid at Tabuaeran and Kiritimati exhibited the typical bottom-heavy pattern. Reefs without people exhibited less coral disease and greater coral recruitment relative to more inhabited reefs. Thus, protection from overfishing and pollution appears to increase the resilience of reef ecosystems to the effects of global warming.

Microbial viruses can control host abundances via density-dependent lytic predator-prey dynamics. Less clear is how temperate viruses, which coexist and replicate with their host, influence microbial communities. Here we show that virus-like particles are relatively less abundant at high host densities. This suggests suppressed lysis where established models predict lytic dynamics are favoured. Meta-analysis of published viral and microbial densities showed that this trend was widespread in diverse ecosystems ranging from soil to freshwater to human lungs. Experimental manipulations showed viral densities more consistent with temperate than lytic life cycles at increasing microbial abundance. An analysis of 24 coral reef viromes showed a relative increase in the abundance of hallmark genes encoded by temperate viruses with increased microbial abundance. Based on these four lines of evidence, we propose the Piggyback-the-Winner model wherein temperate dynamics become increasingly important in ecosystems with high microbial densities; thus 'more microbes, fewer viruses'.

Declines in coral cover are generally associated with increases in the abundance of fleshy algae. In many cases, it remains unclear whether algae are responsible, directly or indirectly, for coral death or whether they simply settle on dead coral surfaces. Here, we show that algae can indirectly cause coral mortality by enhancing microbial activity via the release of dissolved compounds. When coral and algae were placed in chambers together but separated by a 0.02 mum filter, corals suffered 100% mortality. With the addition of the broad-spectrum antibiotic ampicillin, mortality was completely prevented. Physiological measurements showed complementary patterns of increasing coral stress with proximity to algae. Our results suggest that as human impacts increase and algae become more abundant on reefs a positive feedback loop may be created whereby compounds released by algae enhance microbial activity on live coral surfaces causing mortality of corals and further algal growth.

We reviewed over 407 global seaweed introduction events and have increased the total number of introduced seaweed species to 277. Using binomial tests we show that several algal families contain more successful invaders than would be expected by chance, highlighting groups that should be targeted for management. Hull-fouling and aquaculture are the most significant sources of seaweed invaders and should be carefully regulated. The ecological effects of introduced seaweeds have been studied in only 6% of the species, but these studies show mostly negative effects or changes to the native biota. Herbivores generally prefer native to introduced seaweeds, and are unlikely to control spread, as they can do in other habitats. Undisturbed marine communities can be at least initially resistant to most introduced seaweeds aside from the siphonous green species; however, disturbances and eutrophication can facilitate invasion. Major research gaps include community-level ecological studies and economic assessments.

Social network analysis provides a broad and complex perspective on animal sociality that is widely applicable to almost any species. Recent applications demonstrate the utility of network analysis for advancing our understanding of the dynamics, selection pressures, development, and evolution of complex social systems. However, most studies of animal social networks rely primarily on a descriptive approach. To propel the field of animal social networks beyond exploratory analyses and to facilitate the integration of quantitative methods that allow for the testing of ecologically and evolutionarily relevant hypotheses, we review methodological and conceptual advances in network science, which are underutilized in studies of animal sociality. First, we highlight how the use of statistical modeling and triadic motifs analysis can advance our understanding of the processes that structure networks. Second, we discuss how the consideration of temporal changes and spatial constraints can shed light on the dynamics of social networks. Third, we consider how the study of variation at multiple scales can potentially transform our understanding of the structure and function of animal networks. We direct readers to analytical tools that facilitate the adoption of these new concepts and methods. Our goal is to provide behavioral ecologists with a toolbox of current methods that can stimulate novel insights into the ecological influences and evolutionary pressures structuring networks and advance our understanding of the proximate and ultimate processes that drive animal sociality.

Abstract Nutrient availability and herbivory control the biomass of primary producer communities to varying degrees across ecosystems. Ecological theory, individual experiments in many different systems, and system‐specific quantitative reviews have suggested that (i) bottom–up control is pervasive but top–down control is more influential in aquatic habitats relative to terrestrial systems and (ii) bottom–up and top–down forces are interdependent, with statistical interactions that synergize or dampen relative influences on producer biomass. We used simple dynamic models to review ecological mechanisms that generate independent vs. interactive responses of community‐level biomass. We calibrated these mechanistic predictions with the metrics of factorial meta‐analysis and tested their prevalence across freshwater, marine and terrestrial ecosystems with a comprehensive meta‐analysis of 191 factorial manipulations of herbivores and nutrients. Our analysis showed that producer community biomass increased with fertilization across all systems, although increases were greatest in freshwater habitats. Herbivore removal generally increased producer biomass in both freshwater and marine systems, but effects were inconsistent on land. With the exception of marine temperate rocky reef systems that showed positive synergism of nutrient enrichment and herbivore removal, experimental studies showed limited support for statistical interactions between nutrient and herbivory treatments on producer biomass. Top–down control of herbivores, compensatory behaviour of multiple herbivore guilds, spatial and temporal heterogeneity of interactions, and herbivore‐mediated nutrient recycling may lower the probability of consistent interactive effects on producer biomass. Continuing studies should expand the temporal and spatial scales of experiments, particularly in understudied terrestrial systems; broaden factorial designs to manipulate independently multiple producer resources (e.g. nitrogen, phosphorus, light), multiple herbivore taxa or guilds (e.g. vertebrates and invertebrates) and multiple trophic levels; and – in addition to measuring producer biomass – assess the responses of species diversity, community composition and nutrient status.

Consumer and resource control of diversity in plant communities have long been treated as alternative hypotheses. However, experimental and theoretical evidence suggests that herbivores and nutrient resources interactively regulate the number and relative abundance of coexisting plant species. Experiments have yielded divergent and often contradictory responses within and among ecosystems, and no effort has to date reconciled this empirical variation within a general framework. Using data from 274 experiments from marine, freshwater, and terrestrial ecosystems, we present a cross-system analysis of producer diversity responses to local manipulations of resource supply and/or herbivory. Effects of herbivory and fertilization on producer richness differed substantially between systems: ( i ) herbivores reduced species richness in freshwater but tended to increase richness in terrestrial systems; ( ii ) fertilization increased richness in freshwater systems but reduced richness on land. Fertilization consistently reduced evenness, whereas herbivores increased evenness only in marine and terrestrial ecosystems. Producer community evenness and ecosystem productivity mediated fertilization and herbivore effects on diversity across ecosystems. Herbivores increased producer richness in more productive habitats and in producer assemblages with low evenness. These same assemblages also showed the strongest reduction in richness with fertilization, whereas fertilization increased (and herbivory decreased) richness in producer assemblages with high evenness. Our study indicates that system productivity and producer evenness determine the direction and magnitude of top-down and bottom-up control of diversity and may reconcile divergent empirical results within and among ecosystems.

Global climate change and other anthropogenic stressors have heightened the need to rapidly characterize ecological changes in marine benthic communities across large scales. Digital photography enables rapid collection of survey images to meet this need, but the subsequent image annotation is typically a time consuming, manual task. We investigated the feasibility of using automated point-annotation to expedite cover estimation of the 17 dominant benthic categories from survey-images captured at four Pacific coral reefs. Inter- and intra- annotator variability among six human experts was quantified and compared to semi- and fully- automated annotation methods, which are made available at coralnet.ucsd.edu. Our results indicate high expert agreement for identification of coral genera, but lower agreement for algal functional groups, in particular between turf algae and crustose coralline algae. This indicates the need for unequivocal definitions of algal groups, careful training of multiple annotators, and enhanced imaging technology. Semi-automated annotation, where 50% of the annotation decisions were performed automatically, yielded cover estimate errors comparable to those of the human experts. Furthermore, fully-automated annotation yielded rapid, unbiased cover estimates but with increased variance. These results show that automated annotation can increase spatial coverage and decrease time and financial outlay for image-based reef surveys.

Abstract Increasing algal cover on tropical reefs worldwide may be maintained through feedbacks whereby algae outcompete coral by altering microbial activity. We hypothesized that algae and coral release compositionally distinct exudates that differentially alter bacterioplankton growth and community structure. We collected exudates from the dominant hermatypic coral holobiont Porites spp. and three dominant macroalgae (one each Ochrophyta, Rhodophyta and Chlorophyta) from reefs of Mo’orea, French Polynesia. We characterized exudates by measuring dissolved organic carbon (DOC) and fractional dissolved combined neutral sugars (DCNSs) and subsequently tracked bacterioplankton responses to each exudate over 48 h, assessing cellular growth, DOC/DCNS utilization and changes in taxonomic composition (via 16S rRNA amplicon pyrosequencing). Fleshy macroalgal exudates were enriched in the DCNS components fucose (Ochrophyta) and galactose (Rhodophyta); coral and calcareous algal exudates were enriched in total DCNS but in the same component proportions as ambient seawater. Rates of bacterioplankton growth and DOC utilization were significantly higher in algal exudate treatments than in coral exudate and control incubations with each community selectively removing different DCNS components. Coral exudates engendered the smallest shift in overall bacterioplankton community structure, maintained high diversity and enriched taxa from Alphaproteobacteria lineages containing cultured representatives with relatively few virulence factors (VFs) (Hyphomonadaceae and Erythrobacteraceae). In contrast, macroalgal exudates selected for less diverse communities heavily enriched in copiotrophic Gammaproteobacteria lineages containing cultured pathogens with increased VFs (Vibrionaceae and Pseudoalteromonadaceae). Our results demonstrate that algal exudates are enriched in DCNS components, foster rapid growth of bacterioplankton and select for bacterial populations with more potential VFs than coral exudates.

Benthic primary producers in marine ecosystems may significantly alter biogeochemical cycling and microbial processes in their surrounding environment. To examine these interactions, we studied dissolved organic matter release by dominant benthic taxa and subsequent microbial remineralization in the lagoonal reefs of Moorea, French Polynesia. Rates of photosynthesis, respiration, and dissolved organic carbon (DOC) release were assessed for several common benthic reef organisms from the backreef habitat. We assessed microbial community response to dissolved exudates of each benthic producer by measuring bacterioplankton growth, respiration, and DOC drawdown in two-day dark dilution culture incubations. Experiments were conducted for six benthic producers: three species of macroalgae (each representing a different algal phylum: Turbinaria ornata--Ochrophyta; Amansia rhodantha--Rhodophyta; Halimeda opuntia--Chlorophyta), a mixed assemblage of turf algae, a species of crustose coralline algae (Hydrolithon reinboldii) and a dominant hermatypic coral (Porites lobata). Our results show that all five types of algae, but not the coral, exuded significant amounts of labile DOC into their surrounding environment. In general, primary producers with the highest rates of photosynthesis released the most DOC and yielded the greatest bacterioplankton growth; turf algae produced nearly twice as much DOC per unit surface area than the other benthic producers (14.0±2.8 µmol h⁻¹ dm⁻²), stimulating rapid bacterioplankton growth (0.044±0.002 log10 cells h⁻¹) and concomitant oxygen drawdown (0.16±0.05 µmol L⁻¹ h⁻¹ dm⁻²). Our results demonstrate that benthic reef algae can release a significant fraction of their photosynthetically-fixed carbon as DOC, these release rates vary by species, and this DOC is available to and consumed by reef associated microbes. These data provide compelling evidence that benthic primary producers differentially influence reef microbial dynamics and biogeochemical parameters (i.e., DOC and oxygen availability, bacterial abundance and metabolism) in coral reef communities.

Microbialization refers to the observed shift in ecosystem trophic structure towards higher microbial biomass and energy use. On coral reefs, the proximal causes of microbialization are overfishing and eutrophication, both of which facilitate enhanced growth of fleshy algae, conferring a competitive advantage over calcifying corals and coralline algae. The proposed mechanism for this competitive advantage is the DDAM positive feedback loop (dissolved organic carbon (DOC), disease, algae, microorganism), where DOC released by ungrazed fleshy algae supports copiotrophic, potentially pathogenic bacterial communities, ultimately harming corals and maintaining algal competitive dominance. Using an unprecedented data set of >400 samples from 60 coral reef sites, we show that the central DDAM predictions are consistent across three ocean basins. Reef algal cover is positively correlated with lower concentrations of DOC and higher microbial abundances. On turf and fleshy macroalgal-rich reefs, higher relative abundances of copiotrophic microbial taxa were identified. These microbial communities shift their metabolic potential for carbohydrate degradation from the more energy efficient Embden–Meyerhof–Parnas pathway on coral-dominated reefs to the less efficient Entner–Doudoroff and pentose phosphate pathways on algal-dominated reefs. This ‘yield-to-power’ switch by microorganism directly threatens reefs via increased hypoxia and greater CO2 release from the microbial respiration of DOC. Analysis of 60 sites in three ocean basins suggests that overgrowth of fleshy algae on coral reefs supports higher microbial abundances dominated by copiotrophic, potentially pathogenic bacteria via the provision of dissolved inorganic carbon.

Numerous studies have documented declines in the abundance of reef-building corals over the last several decades and in some but not all cases, phase shifts to dominance by macroalgae have occurred. These assessments, however, often ignore the remainder of the benthos and thus provide limited information on the present-day structure and function of coral reef communities. Here, using an unprecedentedly large dataset collected within the last 10 years across 56 islands spanning five archipelagos in the central Pacific, we examine how benthic reef communities differ in the presence and absence of human populations. Using islands as replicates, we examine whether benthic community structure is associated with human habitation within and among archipelagos and across latitude. While there was no evidence for coral to macroalgal phase shifts across our dataset we did find that the majority of reefs on inhabited islands were dominated by fleshy non-reef-building organisms (turf algae, fleshy macroalgae and non-calcifying invertebrates). By contrast, benthic communities from uninhabited islands were more variable but in general supported more calcifiers and active reef builders (stony corals and crustose coralline algae). Our results suggest that cumulative human impacts across the central Pacific may be causing a reduction in the abundance of reef builders resulting in island scale phase shifts to dominance by fleshy organisms.

Holobionts are species-specific associations between macro- and microorganisms. On coral reefs, the benthic coverage of coral and algal holobionts varies due to natural and anthropogenic forcings. Different benthic macroorganisms are predicted to have specific microbiomes. In contrast, local environmental factors are predicted to select for specific metabolic pathways in microbes. To reconcile these two predictions, we hypothesized that adaptation of microbiomes to local conditions is facilitated by the horizontal transfer of genes responsible for specific metabolic capabilities. To test this hypothesis, microbial metagenomes were sequenced from 22 coral reefs at 11 Line Islands in the central Pacific that together span a wide range of biogeochemical and anthropogenic influences. Consistent with our hypothesis, the percent cover of major benthic functional groups significantly correlated with particular microbial taxa. Reefs with higher coral cover had a coral microbiome with higher abundances of Alphaproteobacteria (such as Rhodobacterales and Sphingomonadales), whereas microbiomes of algae-dominated reefs had higher abundances of Gammaproteobacteria (such as Alteromonadales, Pseudomonadales, and Vibrionales), Betaproteobacteria, and Bacteriodetes. In contrast to taxa, geography was the strongest predictor of microbial community metabolism. Microbial communities on reefs with higher nutrient availability (e.g., equatorial upwelling zones) were enriched in genes involved in nutrient-related metabolisms (e.g., nitrate and nitrite ammonification, Ton/Tol transport, etc.). On reefs further from the equator, microbes had more genes encoding chlorophyll biosynthesis and photosystems I/II. These results support the hypothesis that core microbiomes are determined by holobiont macroorganisms, and that those core taxa adapt to local conditions by selecting for advantageous metabolic genes.

On coral reefs, herbivorous fishes consume benthic primary producers and regulate competition between fleshy algae and reef-building corals. Many of these species are also important fishery targets, yet little is known about their global status. Using a large-scale synthesis of peer-reviewed and unpublished data, we examine variability in abundance and biomass of herbivorous reef fishes and explore evidence for fishing impacts globally and within regions. We show that biomass is more than twice as high in locations not accessible to fisheries relative to fisheries-accessible locations. Although there are large biogeographic differences in total biomass, the effects of fishing are consistent in nearly all regions. We also show that exposure to fishing alters the structure of the herbivore community by disproportionately reducing biomass of large-bodied functional groups (scraper/excavators, browsers, grazer/detritivores), while increasing biomass and abundance of territorial algal-farming damselfishes (Pomacentridae). The browser functional group that consumes macroalgae and can help to prevent coral-macroalgal phase shifts appears to be most susceptible to fishing. This fishing down the herbivore guild probably alters the effectiveness of these fishes in regulating algal abundance on reefs. Finally, data from remote and unfished locations provide important baselines for setting management and conservation targets for this important group of fishes.

Without drastic efforts to reduce carbon emissions and mitigate globalized stressors, tropical coral reefs are in jeopardy. Strategic conservation and management requires identification of the environmental and socioeconomic factors driving the persistence of scleractinian coral assemblages-the foundation species of coral reef ecosystems. Here, we compiled coral abundance data from 2,584 Indo-Pacific reefs to evaluate the influence of 21 climate, social and environmental drivers on the ecology of reef coral assemblages. Higher abundances of framework-building corals were typically associated with: weaker thermal disturbances and longer intervals for potential recovery; slower human population growth; reduced access by human settlements and markets; and less nearby agriculture. We therefore propose a framework of three management strategies (protect, recover or transform) by considering: (1) if reefs were above or below a proposed threshold of >10% cover of the coral taxa important for structural complexity and carbonate production; and (2) reef exposure to severe thermal stress during the 2014-2017 global coral bleaching event. Our findings can guide urgent management efforts for coral reefs, by identifying key threats across multiple scales and strategic policy priorities that might sustain a network of functioning reefs in the Indo-Pacific to avoid ecosystem collapse.

Abstract Despite advances in sequencing, lack of standardization makes comparisons across studies challenging and hampers insights into the structure and function of microbial communities across multiple habitats on a planetary scale. Here we present a multi-omics analysis of a diverse set of 880 microbial community samples collected for the Earth Microbiome Project. We include amplicon (16S, 18S, ITS) and shotgun metagenomic sequence data, and untargeted metabolomics data (liquid chromatography-tandem mass spectrometry and gas chromatography mass spectrometry). We used standardized protocols and analytical methods to characterize microbial communities, focusing on relationships and co-occurrences of microbially related metabolites and microbial taxa across environments, thus allowing us to explore diversity at extraordinary scale. In addition to a reference database for metagenomic and metabolomic data, we provide a framework for incorporating additional studies, enabling the expansion of existing knowledge in the form of an evolving community resource. We demonstrate the utility of this database by testing the hypothesis that every microbe and metabolite is everywhere but the environment selects. Our results show that metabolite diversity exhibits turnover and nestedness related to both microbial communities and the environment, whereas the relative abundances of microbially related metabolites vary and co-occur with specific microbial consortia in a habitat-specific manner. We additionally show the power of certain chemistry, in particular terpenoids, in distinguishing Earth’s environments (for example, terrestrial plant surfaces and soils, freshwater and marine animal stool), as well as that of certain microbes including Conexibacter woesei (terrestrial soils), Haloquadratum walsbyi (marine deposits) and Pantoea dispersa (terrestrial plant detritus). This Resource provides insight into the taxa and metabolites within microbial communities from diverse habitats across Earth, informing both microbial and chemical ecology, and provides a foundation and methods for multi-omics microbiome studies of hosts and the environment.

Ocean deoxygenation is predicted to threaten marine ecosystems globally. However, current and future oxygen concentrations and the occurrence of hypoxic events on coral reefs remain underexplored. Here, using autonomous sensor data to explore oxygen variability and hypoxia exposure at 32 representative reef sites, we reveal that hypoxia is already pervasive on many reefs. Eighty-four percent of reefs experienced weak to moderate (≤153 µmol O2 kg−1 to ≤92 µmol O2 kg−1) hypoxia and 13% experienced severe (≤61 µmol O2 kg−1) hypoxia. Under different climate change scenarios based on four Shared Socioeconomic Pathways (SSPs), we show that projected ocean warming and deoxygenation will increase the duration, intensity and severity of hypoxia, with more than 94% and 31% of reefs experiencing weak to moderate and severe hypoxia, respectively, by 2100 under SSP5-8.5. This projected oxygen loss could have negative consequences for coral reef taxa due to the key role of oxygen in organism functioning and fitness. Using data on oxygen variability taken from 32 representative reef sites, the authors show that hypoxia is already common. Under future scenarios of ocean warming and deoxygenation, the duration, intensity and severity of hypoxia will increase, with nearly one-third of reefs experiencing severe hypoxia.

Introductions of non-indigenous species to new ecosystems are one of the major threats to biodiversity, ecosystem functions and services. Globally, species introductions may lead to biotic homogenisation, in synergy with other anthropogenic disturbances such as climate change and coastal pollution. Successful marine introductions depend on (1) presence of a transport vector, uptake of propagules and journey survival of the species; (2) suitable environmental conditions in the receiving habitat; and (3) biological traits of the invader to facilitate establishment. Knowledge has improved of the distribution, biology and ecology of high profile seaweed invaders, e.g. Caulerpa taxifolia, Codium fragile ssp. tomentosoides, Sargassum muticum, and Undaria pinnatifida. Limited, regional information is available for less conspicuous species. The mechanisms of seaweed introductions are little understood as research on introduced seaweeds has been mostly reactive, following discoveries of introductions. Sources of introductions mostly cannot be determined with certainty apart from those directly associated with aquaculture activities and few studies have addressed the sometimes serious ecological and economic impacts of seaweed introductions. Future research needs to elucidate the invasion process, interactions between invaders, and impacts of introductions to support prevention and management of seaweed introductions.

Theory predicts that individuals living in fission–fusion societies, in which group members frequently change subgroups, should modify grouping patterns in response to varying social and environmental conditions. Spotted hyaenas, Crocuta crocuta, are long-lived carnivores that reside in permanent social groups called clans. Clans are complex, fission–fusion societies in which individual members travel, rest and forage in subgroups that frequently change composition. We studied two clans in Kenya to provide the first detailed description of fission–fusion dynamics in this species. Because social and ecological circumstances can influence the cohesiveness of animal societies, we evaluated the extent to which specific circumstances promote the formation of subgroups of various sizes. We found that cooperative defence of shared resources during interclan competition and protection from lions were cohesive forces that promoted formation of large subgroups. We also tested hypotheses suggesting factors limiting subgroup size. Mothers with small cubs avoided conspecifics, thereby reducing infanticide risk. Victims of aggression either reconciled fights or separated from former opponents to reduce the immediate costs of escalated aggression in the absence of food. As predicted by the ecological constraints hypothesis, hyaenas adjusted their grouping patterns over both short and long time scales in response to feeding competition. Crocuta were most gregarious during periods of abundant prey, joined clanmates at ephemeral kills in numbers that correlated with the energetic value of the prey and gained the most energy when foraging alone because cooperative hunting attracted numerous competitors. Overall, our findings indicate that resource limitation constrains grouping in this species.

Despite widespread expression of epidermal growth factor (EGF) receptors (EGFRs) and EGF family ligands in non-small-cell lung cancer (NSCLC), EGFR-specific tyrosine kinase inhibitors (TKIs) such as gefitinib exhibit limited activity in this cancer. We propose that autocrine growth signaling pathways distinct from EGFR are active in NSCLC cells. To this end, gene expression profiling revealed frequent coexpression of specific fibroblast growth factors (FGFs) and FGF receptors (FGFRs) in NSCLC cell lines. It is noteworthy that FGF2 and FGF9 as well as FGFR1 IIIc and/or FGFR2 IIIc mRNA and protein are frequently coexpressed in NSCLC cell lines, especially those that are insensitive to gefitinib. Specific silencing of FGF2 reduced anchorage-independent growth of two independent NSCLC cell lines that secrete FGF2 and coexpress FGFR1 IIIc and/or FGFR2 IIIc. Moreover, a TKI [(+/-)-1-(anti-3-hydroxy-cyclopentyl)-3-(4-methoxy-phenyl)-7-phenylamino-3,4-dihydro-1H-pyrimido-[4,5-d]pyrimidin-2-one (RO4383596)] that targets FGFRs inhibited basal FRS2 and extracellular signal-regulated kinase phosphorylation, two measures of FGFR activity, as well as proliferation and anchorage-independent growth of NSCLC cell lines that coexpress FGF2 or FGF9 and FGFRs. By contrast, RO4383596 influenced neither signal transduction nor growth of NSCLC cell lines lacking FGF2, FGF9, FGFR1, or FGFR2 expression. Thus, FGF2, FGF9 and their respective high-affinity FGFRs comprise a growth factor autocrine loop that is active in a subset of gefitinib-insensitive NSCLC cell lines.

The coral reef benthos is primarily colonized by corals and algae, which are often in direct competition with one another for space. Numerous studies have shown that coral-associated Bacteria are different from the surrounding seawater and are at least partially species specific (i.e. the same bacterial species on the same coral species). Here we extend these microbial studies to four of the major ecological functional groups of algae found on coral reefs: upright and encrusting calcifying algae, fleshy algae, and turf algae, and compare the results to the communities found on the reef-building coral Montastraea annularis. It was found using 16S rDNA tag pyrosequencing that the different algal genera harbour characteristic bacterial communities, and these communities were generally more diverse than those found on corals. While the majority of coral-associated Bacteria were related to known heterotrophs, primarily consuming carbon-rich coral mucus, algal-associated communities harboured a high percentage of autotrophs. The majority of algal-associated autotrophic Bacteria were Cyanobacteria and may be important for nitrogen cycling on the algae. There was also a rich diversity of photosynthetic eukaryotes associated with the algae, including protists, diatoms, and other groups of microalgae. Together, these observations support the hypothesis that coral reefs are a vast landscape of distinctive microbial communities and extend the holobiont concept to benthic algae.

Coalitionary support in agonistic interactions represents cooperation because intervening in a fight is potentially costly to the donor of support but benefits the recipient. Here, we first review the characteristics of, and evolutionary forces favoring, intragroup coalitions in 49 species and find that patterns of intragroup coalition formation are remarkably similar between primates and nonprimates. We then test hypotheses suggesting kin selection, reciprocal altruism, and direct benefits as adaptive explanations for coalitionary interventions among adult female spotted hyenas (Crocuta crocuta) belonging to a large social group in Kenya. As predicted by kin selection theory, females supported close kin most often, and the density (connectedness) of cooperation networks increased with genetic relatedness. Nevertheless, kinship failed to protect females from coalitionary attacks. We found no evidence of enduring alliances based on reciprocal support among unrelated adult females. Instead, donors generally minimized costs to themselves, intervening most often during low-intensity fights and when feeding opportunities were unavailable. Females also gained direct benefits from directing coalitionary attacks toward subordinates. Finally, females monitored the number of dominant bystanders in the “audience” at fights and modified their level of cooperation based on this knowledge. Overall, hyenas made flexible decisions regarding whether or not to intervene in fights, modifying their tendency to cooperate based on multiple types of information about their immediate social and ecological environments. Taken together, these findings indicate that the combined evolutionary forces of kin selection and direct benefits derived from reinforcing the status quo drive coalitionary interventions among adult female spotted hyenas.

Distribution and Reproductive Characteristics of Nonindigenous and Invasive Marine Algae in the Hawaiian Islands1 Jennifer E. Smith, Cynthia L. Hunter, and Celia M. Smith Abstract Quantitative and qualitative surveys were conducted on five of the main Hawaiian Islands to determine the current distribution of nonindigenous algae and to assess the level of impact that these algal species pose to Hawai'i's marine ecosystems. Maps were generated to examine the spread of these organisms from initial sites of introduction and to assimilate information regarding habitat characteristics that appear to make some sites more susceptible to invasion than others. Blooms of native invasive algae were also documented when encountered. The potential for vegetative propagation via fragmentation was examined experimentally as a mode of reproduction for four of the most common species of nonindigenous algae in Hawai'i. This research has demonstrated that each of these algal species currently has a distinctive distribution and reproductive strategies appear to vary among species. More research is needed to further understand the competitive strategies and unique ecological characteristics that allow these nonindigenous species to become highly successful in the Hawaiian Islands. Healthy coral reef ecosystems are often dominated by reef-building corals and coralline algae, with macroalgae and algal turfs typically restricted to areas of reefs that are relatively less accessible to herbivores. On reefs subjected to anthropogenic disturbances such as increased terrestrial nutrients or the removal of grazers, however, algal growth rates may exceed grazing rates and result in overgrowth of corals and other benthic invertebrates (Hatcher and Larkum 1983, Littler and Littler 1984, Steven and Larkum 1993, Smith et al. 2001, Stimson et al. 2001). The long-term consequences of these phase shifts from coral to algal dominance may include the loss of biodiversity, a decrease in the intrinsic value of the reef, changes in the community structure of the reef fishes dependent upon corals for habitat and shelter, and erosion of the physical structure of the reef (Hughes 1994). Phase shifts involving both indigenous and nonindigenous algae have been documented in Hawai'i but have not been thoroughly studied. Thus, documenting the nature and characteristics of these problems before invasive algal species become ecological dominants on Hawai'i's reefs is crucial. Blooms of both indigenous and nonindigenous marine algae have become common in the Hawaiian Islands over the last several decades (Russell 1987, 1992, Stimson et al. 1996, Rodgers and Cox 1998). In tropical regions, blooms of indigenous algae have often been tied to reductions in grazing intensity and increases in anthropogenically derived nutrient levels (Miller et al. 1999, McClanahan et al. 2001, McCook et al. 2001, Smith et al. 2001, Stimson et al. 2001, Thacker et al. 2001). However, the mechanisms driving the [End Page 299] abundance and success of nonindigenous algae worldwide remain unclear and may be the result of a number of interacting factors. The introduction of nonindigenous algae in the marine environment has been, and continues to be, a devastating issue in relation to the health and stability of nearshore ecosystems. The introduction and impacts of nonindigenous algae such as Caulerpa taxifolia (Vahl) C. Agardh in the Mediterranean, Codium fragile (Sur.) Hariot subsp. tomentosoides (van Goor) Silva in New England and New Zealand, Sargassum muticum (Yendo) Fensholt in Europe and Mexico, and Undaria pinnatifida (Harvey) Suringar in Australia, New Zealand, and Europe have been widely documented (Hanisak 1980, Carlton and Scanlon 1985, Espinoza 1990, Meinesz et al. 1993, Trowbridge 1995, Bellan-Santini et al. 1996, Critchley et al. 1997, Ferrer et al. 1997, Andrew and Viejo 1998, Campbell and Burridge 1998, Curiel et al. 1998, Karlsson and Loo 1999, Stuart et al. 1999, Schaffelke et al. 2000). In the Tropics, nonindigenous marine plants pose threats to both coral-dominated habitats and sea grass beds and have the potential to reduce biodiversity and substantially alter the structure of reef ecosystems (Maragos et al. 1996, Critchley et al. 1997, Den Hartog 1997). The success of these nonindigenous algae may be the result of a variety of factors including chemical or physical defense from herbivory and diverse physiological characteristics that lead to rapid growth rates (Borowitzka 1981, Duffy and Hay 1990, Holmlund et al. 1990, Hay et al. 1994...

Spotted hyenas (Crocuta crocuta) are large mammalian carnivores, but their societies, called 'clans', resemble those of such cercopithecine primates as baboons and macaques with respect to their size, hierarchical structure, and frequency of social interaction among both kin and unrelated group-mates. However, in contrast to cercopithecine primates, spotted hyenas regularly hunt antelope and compete with group-mates for access to kills, which are extremely rich food sources, but also rare and ephemeral. This unique occurrence of baboon-like sociality among top-level predators has favoured the evolution of many unusual traits in this species. We briefly review the relevant socio-ecology of spotted hyenas, document great demographic variation but little variation in social structure across the species' range, and describe the long-term fitness consequences of rank-related variation in resource access among clan-mates. We then summarize patterns of genetic relatedness within and between clans, including some from a population that had recently gone through a population bottleneck, and consider the roles of sexually dimorphic dispersal and female mate choice in the generation of these patterns. Finally, we apply social network theory under varying regimes of resource availability to analyse the effects of kinship on the stability of social relationships among members of one large hyena clan in Kenya. Although social bonds among both kin and non-kin are weakest when resource competition is most intense, hyenas sustain strong social relationships with kin year-round, despite constraints imposed by resource limitation. Our analyses suggest that selection might act on both individuals and matrilineal kin groups within clans containing multiple matrilines.

The clearance rate of natural planktonic assemblages was measured for the blue mussel Mytilus edulis (L.) and a co-occurring fouling community from mussel rope cultures using flow cytometry. Blue mussels had significantly higher clearance rates for all particle types and size classes. In addition, blue mussels showed selective feeding in favor of small phytoplankton (3–5 μm), whereas the solitary ascidian Ciona intestinalis (L.) and the suspension-feeding gastropod Crepidula fornicata (L.) showed preferential selection for large phytoplankton (> 16 μm). Clearance rates for large phytoplankton by these members of the fouling community were, however, always lower than blue mussels. Under conditions where food is not a limiting factor, interspecific competition for food by the associated fouling community should not significantly limit the yield of mussels.

Macroalgal blooms of Hypnea musciformis and Ulvafasciata in coastal waters of Maui only occur in areas of substantial anthropogenic nutrient input, sources of which include wastewater effluent via injection wells, leaking cesspools and agricultural fertilizers. Algal delta(15)N signatures were used to map anthropogenic nitrogen through coastal surveys (island-wide and fine-scale) and algal deployments along nearshore and offshore gradients. Algal delta(15)N values of 9.8 per thousand and 2.0-3.5 per thousand in Waiehu and across the north-central coast, respectively, suggest that cesspool and agricultural nitrogen reached the respective adjacent coastlines. Effluent was detected in areas proximal to the Wastewater Reclamation Facilities (WWRF) operating Class V injection wells in Lahaina, Kihei and Kahului through elevated algal delta(15)N values (17.8-50.1 per thousand). From 1997 to 2008, the three WWRFs injected an estimated total volume of 193 million cubic meters (51 billion gallons) of effluent with a nitrogen mass of 1.74 million kilograms (3.84 million pounds).

Abstract Plant‐herbivore interactions mediate the trophic structure of ecosystems. We use a comprehensive data set extracted from the literature to test the relative explanatory power of two contrasting bodies of ecological theory, the metabolic theory of ecology (MTE) and ecological stoichiometry (ES), for per‐capita and population‐level rates of herbivory across ecosystems. We found that ambient temperature and herbivore body size (MTE) as well as stoichiometric mismatch (ES) both constrained herbivory, but at different scales of biological organization. Herbivore body size, which varied over 11 orders of magnitude, was the primary factor explaining variation in per‐capita rates of herbivory. Stoichiometric mismatch explained more variation in population‐level herbivory rates and also in per‐capita rates when we examined data from within functionally similar trophic groups (e.g. zooplankton). Thus, predictions from metabolic and stoichiometric theories offer complementary explanations for patterns of herbivory that operate at different scales of biological organization.

Community structure and assembly are determined in part by environmental heterogeneity. While reef-building corals respond negatively to warming (i.e. bleaching events) and ocean acidification (OA), the extent of present-day natural variability in pH on shallow reefs and ecological consequences for benthic assemblages is unknown. We documented high resolution temporal patterns in temperature and pH from three reefs in the central Pacific and examined how these data relate to community development and net accretion rates of early successional benthic organisms. These reefs experienced substantial diel fluctuations in temperature (0.78°C) and pH (>0.2) similar to the magnitude of 'warming' and 'acidification' expected over the next century. Where daily pH within the benthic boundary layer failed to exceed pelagic climatological seasonal lows, net accretion was slower and fleshy, non-calcifying benthic organisms dominated space. Thus, key aspects of coral reef ecosystem structure and function are presently related to natural diurnal variability in pH.

Leadership is an active area of research in both the biological and social sciences. This review provides a transdisciplinary synthesis of biological and social-science views of leadership from an evolutionary perspective, and examines patterns of leadership in a set of small-scale human and non-human mammalian societies. We review empirical and theoretical work on leadership in four domains: movement, food acquisition, within-group conflict mediation, and between-group interactions. We categorize patterns of variation in leadership in five dimensions: distribution (across individuals), emergence (achieved versus inherited), power, relative payoff to leadership, and generality (across domains). We find that human leadership exhibits commonalities with and differences from the broader mammalian pattern, raising interesting theoretical and empirical issues.

Humans are modifying the availability of nutrients such as nitrogen (N) and phosphorus (P), and it is therefore important to understand how these nutrients, independently or in combination, influence the growth and nutrient content of primary producers. Using meta‐analysis of 118 field and laboratory experiments in freshwater, marine and terrestrial ecosystems, we tested hypotheses about co‐limitation of N and P by comparing the effects of adding N alone, P alone, and both N and P together on internal N (e.g. %N, C:N) and P (e.g. %P, C:P) concentrations in autotroph communities. In particular, we tested the following predictions. First, if only one nutrient was limiting, addition of that nutrient should decrease the concentration of the other nutrient, but addition of the non‐limiting nutrient would have no effect on the internal concentration of the limiting nutrient. If community co‐limitation was occurring then addition of either nutrient should result in a decrease in the internal concentration of the other nutrient. Community co‐limitation could also result in no change – or even an increase – in N concentrations in response to P addition if P stimulated growth of N fixers. Finally, if biochemically dependent co‐limitation was occurring, addition of a limiting nutrient would not decrease, and could even increase, the concentration of the other, co‐limited nutrient. We found no general evidence for the decrease in the internal concentration of one nutrient due to addition of another nutrient. The one exception to this overall pattern was marine systems, where N addition decreased internal P concentrations. In contrast, P addition increased internal N concentrations across all experiments, consistent with co‐limitation. These results have important implications for understanding the roles that N and P play in controlling producer growth and internal nutrient accumulation as well as for managing the effects of nutrient enrichment in ecosystems. Synthesis On a global scale, humans have doubled nitrogen (N) inputs and quadrupled phosphorus (P) inputs relative to pre‐industrial levels. N and P fertilization influences autotroph internal nutrient concentrations and ratios and thereby affects a variety of community and ecosystem processes, including decomposition and consumer population dynamics. It is therefore critical to understand the effects of nutrient additions on the growth and nutrient concentrations of primary producers. We used meta‐analysis to evaluate the responses of autotroph internal N and P concentrations to additions of N, P, and N+P and make inferences about limitation and co‐limitation of N and P across marine, terrestrial, and freshwater ecosystems. We found little evidence for single‐nutrient limitation, highlighting the fact that multiple nutrients generally limit primary production.

Competition between corals and algae is common on healthy reefs, but certain types of algae (e.g.turf algae, inset) are more harmful to corals than others (e.g.crustose coralline algae, main photo), and these negative effects can be exacerbated by human activities.

Kingman Reef and Palmyra Atoll in the central Pacific are among the most remote coral reefs on the planet. Here we describe spatial patterns in their benthic communities across reef habitats and depths, and consider these in the context of oceanographic gradients. Benthic communities at both locations were dominated by calcifying organisms (54–86% cover), namely hard corals (20–74%) and crustose coralline algae (CCA) (10–36%). While turf algae were relatively common at both locations (8–22%), larger fleshy macroalgae were virtually absent at Kingman (<1%) and rare at Palmyra (0.7–9.3%). Hard coral cover was higher, but with low diversity, in more sheltered habitats such as Palmyra’s backreef and Kingman’s patch reefs. Almost exclusive dominance by slow-growing Porites on Kingman’s patch reefs provides indirect evidence of competitive exclusion, probably late in a successional sequence. In contrast, the more exposed forereef habitats at both Kingman and Palmyra had higher coral diversity and were characterized by fast-growing corals (e.g., Acropora and Pocillopora), indicative of more dynamic environments. In general at both locations, soft coral cover increased with depth, likely reflecting increasingly efficient heterotrophic abilities. CCA and fleshy macroalgae cover decreased with depth, likely due to reduced light. Cover of other calcified macroalgae, predominantly Halimeda, increased with depth. This likely reflects the ability of many calcifying macroalgae to efficiently harvest light at deeper depths, in combination with an increased nutrient supply from upwelling promoting growth. At Palmyra, patterns of hard coral cover with depth were inconsistent, but cover peaked at mid-depths at Kingman. On Kingman’s forereef, benthic community composition was strongly related to wave energy, with hard coral cover decreasing and becoming more spatially clustered with increased wave energy, likely as a result of physical damage leading to patches of coral in localized shelter. In contrast, the cover of turf algae at Kingman was positively related to wave energy, reflecting their ability to rapidly colonize newly available space. No significant patterns with wave energy were observed on Palmyra’s forereef, suggesting that a more detailed model is required to study biophysical coupling there. Kingman, Palmyra, and other remote oceanic reefs provide interesting case studies to explore biophysical influences on benthic ecology and dynamics.

Competition between reef-building corals and benthic algae is of key importance for reef dynamics. These interactions occur on many spatial scales, ranging from chemical to regional. Using microprobes, 16S rDNA pyrosequencing and underwater surveys, we examined the interactions between the reef-building coral Montastraea annularis and four types of benthic algae. The macroalgae Dictyota bartayresiana and Halimeda opuntia, as well as a mixed consortium of turf algae, caused hypoxia on the adjacent coral tissue. Turf algae were also associated with major shifts in the bacterial communities at the interaction zones, including more pathogens and virulence genes. In contrast to turf algae, interactions with crustose coralline algae (CCA) and M. annularis did not appear to be antagonistic at any scale. These zones were not hypoxic, the microbes were not pathogen-like and the abundance of coral-CCA interactions was positively correlated with per cent coral cover. We propose a model in which fleshy algae (i.e. some species of turf and fleshy macroalgae) alter benthic competition dynamics by stimulating bacterial respiration and promoting invasion of virulent bacteria on corals. This gives fleshy algae a competitive advantage over corals when human activities, such as overfishing and eutrophication, remove controls on algal abundance. Together, these results demonstrate the intricate connections and mechanisms that structure coral reefs.

Benthic primary producers in tropical reef ecosystems can alter biogeochemical cycling and microbial processes in the surrounding seawater. In order to quantify these influences, we measured rates of photosynthesis, respiration, and dissolved organic carbon (DOC) exudate release by the dominant benthic primary producers (calcifying and non-calcifying macroalgae, turf-algae and corals) on reefs of Mo‘orea French Polynesia. Subsequently, we examined planktonic and benthic microbial community response to these dissolved exudates by measuring bacterial growth rates and oxygen and DOC fluxes in dark and daylight incubation experiments. All benthic primary producers exuded significant quantities of DOC (roughly 10% of their daily fixed carbon) into the surrounding water over a diurnal cycle. The microbial community responses were dependent upon the source of the exudates and whether the inoculum of microbes included planktonic or planktonic plus benthic communities. The planktonic and benthic microbial communities in the unamended control treatments exhibited opposing influences on DO concentration where respiration dominated in treatments comprised solely of plankton and autotrophy dominated in treatments with benthic plus plankon microbial communities. Coral exudates (and associated inorganic nutrients) caused a shift towards a net autotrophic microbial metabolism by increasing the net production of oxygen by the benthic and decreasing the net consumption of oxygen by the planktonic microbial community. In contrast, the addition of algal exudates decreased the net primary production by the benthic communities and increased the net consumption of oxygen by the planktonic microbial community thereby resulting in a shift towards net heterotrophic community metabolism. When scaled up to the reef habitat, exudate-induced effects on microbial respiration did not outweigh the high oxygen production rates of benthic algae, such that reef areas dominated with benthic primary producers were always estimated to be net autotrophic. However, estimates of microbial consumption of DOC at the reef scale surpassed the DOC exudation rates suggesting net consumption of DOC at the reef-scale. In situ mesocosm experiments using custom-made benthic chambers placed over different types of benthic communities exhibited identical trends to those found in incubation experiments. Here we provide the first comprehensive dataset examining direct primary producer-induced, and indirect microbially mediated alterations of elemental cycling in both benthic and planktonic reef environments over diurnal cycles. Our results highlight the variability of the influence of different benthic primary producers on microbial metabolism in reef ecosystems and the potential implications for energy transfer to higher trophic levels during shifts from coral to algal dominance on reefs.

Honaucins A-C were isolated from the cyanobacterium Leptolyngbya crossbyana which was found overgrowing corals on the Hawaiian coast. Honaucin A consists of (S)-3-hydroxy-γ-butyrolactone and 4-chlorocrotonic acid, which are connected via an ester linkage. Honaucin A and its two natural analogs exhibit potent inhibition of both bioluminescence, a quorum-sensing-dependent phenotype, in Vibrio harveyi BB120 and lipopolysaccharide-stimulated nitric oxide production in the murine macrophage cell line RAW264.7. The decrease in nitric oxide production was accompanied by a decrease in the transcripts of several proinflammatory cytokines, most dramatically interleukin-1β. Synthesis of honaucin A, as well as a number of analogs, and subsequent evaluation in anti-inflammation and quorum-sensing inhibition bioassays revealed the essential structural features for activity in this chemical class and provided analogs with greater potency in both assays.

Despite the heightened awareness of ocean acidification (OA) effects on marine organisms, few studies empirically juxtapose biological responses to CO2 manipulations across functionally distinct primary producers, particularly benthic algae. Algal responses to OA may vary because increasing CO2 has the potential to fertilize photosynthesis but impair biomineralization. Using a series of repeated experiments on Palmyra Atoll, simulated OA effects were tested across a suite of ecologically important coral reef algae, including five fleshy and six calcareous species. Growth, calcification and photophysiology were measured for each species independently and metrics were combined from each experiment using a meta-analysis to examine overall trends across functional groups categorized as fleshy, upright calcareous, and crustose coralline algae (CCA). The magnitude of the effect of OA on algal growth response varied by species, but the direction was consistent within functional groups. Exposure to OA conditions generally enhanced growth in fleshy macroalgae, reduced net calcification in upright calcareous algae, and caused net dissolution in CCA. Additionally, three of the five fleshy seaweeds tested became reproductive upon exposure to OA conditions. There was no consistent effect of OA on algal photophysiology. Our study provides experimental evidence to support the hypothesis that OA will reduce the ability of calcareous algae to biomineralize. Further, we show that CO2 enrichment either will stimulate population or somatic growth in some species of fleshy macroalgae. Thus, our results suggest that projected OA conditions may favor non-calcifying algae and influence the relative dominance of fleshy macroalgae on reefs, perpetuating or exacerbating existing shifts in reef community structure.

Mixotrophy is among the most successful nutritional strategies in terrestrial and marine ecosystems. The ability of organisms to supplement primary nutritional modes along continua of autotrophy and heterotrophy fosters trophic flexibility that can sustain metabolic demands under variable or stressful conditions. Symbiotic, reef-building corals are among the most broadly distributed and ecologically important mixotrophs, yet we lack a basic understanding of how they modify their use of autotrophy and heterotrophy across gradients of food availability. Here, we evaluate how one coral species, Pocillopora meandrina, supplements autotrophic nutrition through heterotrophy within an archipelago and test whether this pattern holds across species globally. Using stable isotope analysis (δ13C) and satellite-derived estimates of nearshore primary production (chlorophyll-a, as a proxy for food availability), we show that P. meandrina incorporates a greater proportion of carbon via heterotrophy when more food is available across five central Pacific islands. We then show that this pattern is consistent globally using data from 15 coral species across 16 locations spanning the Caribbean Sea and the Indian and Pacific Oceans. Globally, surface chlorophyll-a explains 77% of the variation in coral heterotrophic nutrition, 86% for one genus across 10 islands, and 94% when controlling for coral taxonomy within archipelagos. These results demonstrate, for the first time, that satellite-derived estimates of nearshore primary production provide a globally relevant proxy for resource availability that can explain variation in coral trophic ecology. Thus, our model provides a pivotal step toward resolving the biophysical couplings between mixotrophic organisms and spatial patterns of resource availability in the coastal oceans.

In 1964, W. D. Hamilton proposed a novel solution to the long-standing evolutionary puzzle: why do individuals cooperate? Hamilton predicted that, if individuals possess the ability to discriminate on the basis of kinship, then they should gain inclusive fitness benefits by biasing helpful behaviour towards relatives and harmful behaviour away from them. The possibility that kin selection might favour social evolution has now inspired five decades of active research. Here, I synthesize this evidence for social mammals. First, I report on the methodological advances that allow for pedigree construction, and review the evidence for maternal and paternal kin discrimination. Second, I recognize that a substantial body of evidence for the evolution of cooperative breeding via kin selection exists, and then focus on the potential for kin selection to favour less well understood, yet equally salient, targets of selection: social partner choice, coalition formation and social tolerance (withholding aggression). I find that kin selection favours remarkably similar patterns of nepotism in primate and nonprimates with respect to these short-lived social acts. Although social alliances among maternal and paternal kin are common in mammalian societies, kinship largely fails to protect individuals from aggression. Thus, an individual's closest associates and allies, many of whom are kin, are most often an individual's closest competitors within mammalian social groups. Taken together, these findings highlight the value of Hamilton's holistic approach in simultaneously considering the direct benefits of competition and the indirect fitness benefits of cooperation. Despite major empirical advances since the inception of kin selection theory, future tests using newly available molecular and statistical methods in combination with longitudinal behavioural data are required to partition the relative contributions of direct and indirect fitness on the lifetime inclusive fitness. Such approaches will elucidate the relative influences of evolutionary and ecological forces favouring social evolution across the mammalian lineage of social mammals.

Abstract. Assessing the impacts of anthropogenic ocean acidification requires knowledge of present-day and future environmental conditions. Here, we present a simple model for upwelling margins that projects anthropogenic acidification trajectories by combining high-temporal-resolution sensor data, hydrographic surveys for source water characterization, empirical relationships of the CO2 system, and the atmospheric CO2 record. This model characterizes CO2 variability on timescales ranging from hours (e.g., tidal) to months (e.g., seasonal), bridging a critical knowledge gap in ocean acidification research. The amount of anthropogenic carbon in a given water mass is dependent on the age; therefore a density–age relationship was derived for the study region and then combined with the 2013 Intergovernmental Panel on Climate Change CO2 emission scenarios to add density-dependent anthropogenic carbon to the sensor time series. The model was applied to time series from autonomous pH sensors deployed in the surf zone, kelp forest, submarine canyon edge, and shelf break in the upper 100 m of the Southern California Bight. All habitats were within 5 km of one another, and exhibited unique, habitat-specific CO2 variability signatures and acidification trajectories, demonstrating the importance of making projections in the context of habitat-specific CO2 signatures. In general, both the mean and range of pCO2 increase in the future, with the greatest increase in both magnitude and range occurring in the deeper habitats due to reduced buffering capacity. On the other hand, the saturation state of aragonite (ΩAr) decreased in both magnitude and range. This approach can be applied to the entire California Current System, and upwelling margins in general, where sensor and complementary hydrographic data are available.

Abstract In the 4.5 decades since Altmann (1974) published her seminal paper on the methods for the observational study of behaviour, automated detection and analysis of social interaction networks have fundamentally transformed the ways that ecologists study social behaviour. Methodological developments for collecting data remotely on social behaviour involve indirect inference of associations, direct recordings of interactions and machine vision. These recent technological advances are improving the scale and resolution with which we can dissect interactions among animals. They are also revealing new intricacies of animal social interactions at spatial and temporal resolutions as well as in ecological contexts that have been hidden from humans, making the unwatchable seeable. We first outline how these technological applications are permitting researchers to collect exquisitely detailed information with little observer bias. We further recognize new emerging challenges from these new reality‐mining approaches. While technological advances in automating data collection and its analysis are moving at an unprecedented rate, we urge ecologists to thoughtfully combine these new tools with classic behavioural and ecological monitoring methods to place our understanding of animal social networks within fundamental biological contexts.

Abstract Coral reefs are facing intensifying stressors, largely due to global increases in seawater temperature and decreases in pH. However, there is extensive environmental variability within coral reef ecosystems, which can impact how organisms respond to global trends. We deployed spatial arrays of autonomous sensors across distinct shallow coral reef habitats to determine patterns of spatiotemporal variability in seawater physicochemical parameters. Temperature and pH were positively correlated over the course of a day due to solar heating and light‐driven metabolism. The mean temporal and spatial ranges of temperature and pH were positively correlated across all sites, with different regimes of variability observed in different reef types. Ultimately, depth was a reliable predictor of the average diel ranges in both seawater temperature and pH. These results demonstrate that there is widespread environmental variability on diel timescales within coral reefs related to water column depth, which needs to be included in assessments of how global change will locally affect reef ecosystems.

Space limitation leads to competition between benthic, sessile organisms on coral reefs. As a primary example, reef-building corals are in direct contact with each other and many different species and functional groups of algae. Here we characterize interactions between three coral genera and three algal functional groups using a combination of hyperspectral imaging and oxygen microprofiling. We also performed in situ interaction transects to quantify the relative occurrence of these interaction on coral reefs. These studies were conducted in the Southern Line Islands, home to some of the most remote and near-pristine reefs in the world. Our goal was to determine if different types of coral-coral and coral-algal interactions were characterized by unique fine-scale physiological signatures. This is the first report using hyperspectral imaging for characterization of marine benthic organisms at the micron scale and proved to be a valuable tool for discriminating among different photosynthetic organisms. Consistent patterns emerged in physiology across different types of competitive interactions. In cases where corals were in direct contact with turf or macroalgae, there was a zone of hypoxia and altered pigmentation on the coral. In contrast, interaction zones between corals and crustose coralline algae (CCA) were not hypoxic and the coral tissue was consistent across the colony. Our results suggest that at least two main characteristic coral interaction phenotypes exist: 1) hypoxia and coral tissue disruption, seen with interactions between corals and fleshy turf and/or some species of macroalgae, and 2) no hypoxia or tissue disruption, seen with interactions between corals and some species of CCA. Hyperspectral imaging in combination with oxygen profiling provided useful information on competitive interactions between benthic reef organisms, and demonstrated that some turf and fleshy macroalgae can be a constant source of stress for corals, while CCA are not.

The adaptor protein SLP76 directs signaling downstream of the T cell receptor (TCR) and is essential for thymocyte development. SLP76 contains three N-terminal tyrosines that are critical for its function. To define the role of these residues in thymocyte development, we generated two lines of "knock-in" mice, one expressing a mutation in tyrosine 145 (Y145F) and a second harboring two point mutations at tyrosines 112 and 128 (Y112-128F). We show here that although thymocyte development requires both Y145- and Y112-128-generated signals, selection was more dependent upon Y145. Although several proximal TCR signaling events were defective in both mutant mice, phosphorylation of the guanine nucleotide exchange factor, Vav1, and activation of Itk-dependent pathways were differentially affected by mutations at Y112-128 and Y145, respectively. Analysis of mice expressing one Y145F and one Y112-128F allele revealed that these mutants could complement one another in trans, demonstrating cooperativity between two or more SLP76 molecules. Thus, the N-terminal tyrosines of SLP76 are required for thymocyte selection but can function on separate molecules to support TCR signaling.

MEPS Marine Ecology Progress Series Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsTheme Sections MEPS 440:67-78 (2011) - DOI: https://doi.org/10.3354/meps09309 Species-specific consequences of ocean acidification for the calcareous tropical green algae Halimeda Nichole N. Price1,*, Scott L. Hamilton2, 3, Jesse S. Tootell2, Jennifer E. Smith1 1Center for Marine Biodiversity and Conservation, Marine Biology Research Division, Scripps Institution of Oceanography, La Jolla, California 92093-0202, USA 2 Ecology, Evolution and Marine Biology Department, University of California, Santa Barbara, California 93106, USA 3Moss Landing Marine Laboratories, 8272 Moss Landing Rd., Moss Landing, California 95039, USA *Email: nprice@ucsd.edu ABSTRACT: Ocean acidification (OA), resulting from increasing dissolved carbon dioxide (CO2) in surface waters, is likely to affect many marine organisms, particularly those that calcify. Recent OA studies have demonstrated negative and/or differential effects of reduced pH on growth, development, calcification and physiology, but most of these have focused on taxa other than calcareous benthic macroalgae. Here we investigate the potential effects of OA on one of the most common coral reef macroalgal genera, Halimeda. Species of Halimeda produce a large proportion of the sand in the tropics and are a major contributor to framework development on reefs because of their rapid calcium carbonate production and high turnover rates. On Palmyra Atoll in the central Pacific, we conducted a manipulative bubbling experiment to investigate the potential effects of OA on growth, calcification and photophysiology of 2 species of Halimeda. Our results suggest that Halimeda is highly susceptible to reduced pH and aragonite saturation state but the magnitude of these effects is species specific. H. opuntia suffered net dissolution and 15% reduction in photosynthetic capacity, while H. taenicola did not calcify but did not alter photophysiology in experimental treatments. The disparate responses of these species to elevated CO2 partial ­pressure (pCO2) may be due to anatomical and physiological differences and could represent a shift in their relative dominance in the face of OA. The ability for a species to exert biological control over calcification and the species specific role of the carbonate skeleton may have important implications for the potential effects of OA on ecological function in the future. KEY WORDS: Carbon dioxide · pH · Coral reef · Climate change · Benthic algae · Carbonate chemistry Full text in pdf format PreviousNextCite this article as: Price NN, Hamilton SL, Tootell JS, Smith JE (2011) Species-specific consequences of ocean acidification for the calcareous tropical green algae Halimeda. Mar Ecol Prog Ser 440:67-78. https://doi.org/10.3354/meps09309 Export citation RSS - Facebook - Tweet - linkedIn Cited by Published in MEPS Vol. 440. Online publication date: October 28, 2011 Print ISSN: 0171-8630; Online ISSN: 1616-1599 Copyright © 2011 Inter-Research.

Societies characterized by fission–fusion dynamics consist of subgroups that frequently change in size and composition. Although this flexible lifestyle permits individuals to reduce conflicts of interest, it simultaneously imposes a unique set of challenges on group members that are regularly subject to prolonged separation. Theory predicts animals should evolve ritualized and risky displays to quickly update relationships at reunions. Here we investigated the function of nonconciliatory greetings among adult female spotted hyaenas, Crocuta crocuta, belonging to a single, large female-dominated social group in Kenya. We tested three hypotheses forwarded to explain the occurrence of these multimodal signals: formal submission, tension reduction and social bonding hypotheses. In contrast to predictions of the formal submission hypothesis, rank distance and relative rank were excluded from our best model predicting greetings among adult females. Moreover, directional consistency of greetings was low (0.65) compared to that of submissive behaviours during dyadic agonistic interactions (0.97). Instead, our data revealed that adult females greeted coalition partners and close associates, including kin, most often per opportunity, and they did so in neutral contexts more frequently than in situations characterized by social tension. Although these findings are in direct contrast to the predictions of the tension reduction and formal submission hypotheses, they strongly support the social bonding hypothesis. Importantly, the immediate act of greeting promoted cooperation among allies during intragroup and intergroup coalition formation. Thus, these risky, multimodal signals permit hyaenas to effectively communicate cooperative affiliations within a continuously shifting social milieu.

The Line Islands are calcium carbonate coral reef platforms located in iron-poor regions of the central Pacific. Natural terrestrial run-off of iron is non-existent and aerial deposition is extremely low. However, a number of ship groundings have occurred on these atolls. The reefs surrounding the shipwreck debris are characterized by high benthic cover of turf algae, macroalgae, cyanobacterial mats and corallimorphs, as well as particulate-laden, cloudy water. These sites also have very low coral and crustose coralline algal cover and are call black reefs because of the dark-colored benthic community and reduced clarity of the overlying water column. Here we use a combination of benthic surveys, chemistry, metagenomics and microcosms to investigate if and how shipwrecks initiate and maintain black reefs. Comparative surveys show that the live coral cover was reduced from 40 to 60% to <10% on black reefs on Millennium, Tabuaeran and Kingman. These three sites are relatively large (>0.75 km(2)). The phase shift occurs rapidly; the Kingman black reef formed within 3 years of the ship grounding. Iron concentrations in algae tissue from the Millennium black reef site were six times higher than in algae collected from reference sites. Metagenomic sequencing of the Millennium Atoll black reef-associated microbial community was enriched in iron-associated virulence genes and known pathogens. Microcosm experiments showed that corals were killed by black reef rubble through microbial activity. Together these results demonstrate that shipwrecks and their associated iron pose significant threats to coral reefs in iron-limited regions.

Anthropological theory suggests direct links between the origins of cooperation in hominins and a shift toward an energy-rich diet. Although the degree to which early hominins ate meat remains controversial, here we reevaluate the notion, originally suggested by Schaller and Lowther in 1969, that mammalian carnivores can shed light on human origins. Precisely when cooperation evolved in hominins or carnivores is unknown, but species from both groups cooperatively hunt large game, defend resources, guard against predators, and rear young. We present a large-scale comparative analysis of extant carnivore species, quantifying anatomical, ecological, and behavioral correlates of cooperation to determine whether metabolic rate, body and relative brain size, life history traits, and social cohesion coevolved with cooperation. We focus heavily on spotted hyenas, which live in more complex societies than other carnivores. Hyenas regularly join forces with kin and nonkin to hunt large antelope and to defend resources during intergroup conflicts and disputes with lions. Our synthesis highlights reduced sexual dimorphism, increased reproductive investment, high population density, fission-fusion dynamics, endurance hunting of big game in open habitats, and large brains as important correlates of cooperation among carnivores. We discuss the relevance of our findings to understanding the origins of cooperation in hominins.

For sessile organisms such as reef-building corals, differences in the degree of dispersion of individuals across a landscape may result from important differences in life-history strategies or may reflect patterns of habitat availability. Descriptions of spatial patterns can thus be useful not only for the identification of key biological and physical mechanisms structuring an ecosystem, but also by providing the data necessary to generate and test ecological theory. Here, we used an in situ imaging technique to create large-area photomosaics of 16 plots at Palmyra Atoll, central Pacific, each covering 100 m2 of benthic habitat. We mapped the location of 44,008 coral colonies and identified each to the lowest taxonomic level possible. Using metrics of spatial dispersion, we tested for departures from spatial randomness. We also used targeted model fitting to explore candidate processes leading to differences in spatial patterns among taxa. Most taxa were clustered and the degree of clustering varied by taxon. A small number of taxa did not significantly depart from randomness and none revealed evidence of spatial uniformity. Importantly, taxa that readily fragment or tolerate stress through partial mortality were more clustered. With little exception, clustering patterns were consistent with models of fragmentation and dispersal limitation. In some taxa, dispersion was linearly related to abundance, suggesting density dependence of spatial patterning. The spatial patterns of stony corals are non-random and reflect fundamental life-history characteristics of the taxa, suggesting that the reef landscape may, in many cases, have important elements of spatial predictability.

Abstract Coral reefs are threatened worldwide, and there is a need to develop new approaches to monitor reef health under natural conditions. Because simultaneous measurements of net community production (NCP) and net community calcification (NCC) are used as important indicators of reef health, tools are needed to assess them in situ. Here we present the Benthic Ecosystem and Acidification Measurement System (BEAMS) to provide the first fully autonomous approach capable of sustained, simultaneous measurements of reef NCP and NCC under undisturbed, natural conditions on time scales ranging from tens of minutes to weeks. BEAMS combines the chemical and velocity gradient in the benthic boundary layer to quantify flux from the benthos for a variety of parameters to measure NCP and NCC. Here BEAMS was used to measure these rates from two different sites with different benthic communities on the western reef terrace at Palmyra Atoll for 2 weeks in September 2014. Measurements were made every ∼15 min. The trends in metabolic rates were consistent with the benthic communities between the two sites with one dominated by fleshy organisms and the other dominated by calcifiers (degraded and healthy reefs, respectively). This demonstrates the potential utility of BEAMS as a reef health monitoring tool. NCP and NCC were tightly coupled on time scales of minutes to days, and light was the primary driver for the variability of daily integrated metabolic rates. No correlation between CO 2 levels and daily integrated NCC was observed, indicating that NCC at these sites were not significantly affected by CO 2 .

While shifts from coral to seaweed dominance have become increasingly common on coral reefs and factors triggering these shifts successively identified, the primary mechanisms involved in coral-algae interactions remain unclear. Amongst various potential mechanisms, algal exudates can mediate increases in microbial activity, leading to localized hypoxic conditions which may cause coral mortality in the direct vicinity. Most of the processes likely causing such algal exudate induced coral mortality have been quantified (e.g., labile organic matter release, increased microbial metabolism, decreased dissolved oxygen availability), yet little is known about how reduced dissolved oxygen concentrations affect competitive dynamics between seaweeds and corals. The goals of this study were to investigate the effects of different levels of oxygen including hypoxic conditions on a common hermatypic coral Acropora yongei and the common green alga Bryopsis pennata. Specifically, we examined how photosynthetic oxygen production, dark and daylight adapted quantum yield, intensity and anatomical distribution of the coral innate fluorescence, and visual estimates of health varied with differing background oxygen conditions. Our results showed that the algae were significantly more tolerant to extremely low oxygen concentrations (2–4 mg L−1) than corals. Furthermore corals could tolerate reduced oxygen concentrations, but only until a given threshold determined by a combination of exposure time and concentration. Exceeding this threshold led to rapid loss of coral tissue and mortality. This study concludes that hypoxia may indeed play a significant role, or in some cases may even be the main cause, for coral tissue loss during coral-algae interaction processes.

Holobionts are assemblages of microbial symbionts and their macrobial host. As extant representatives of some of the oldest macro-organisms, corals and algae are important for understanding how holobionts develop and interact with one another. Using untargeted metabolomics, we show that non-self interactions altered the coral metabolome more than self-interactions (i.e. different or same genus, respectively). Platelet activating factor (PAF) and Lyso-PAF, central inflammatory modulators in mammals, were major lipid components of the coral holobionts. When corals were damaged during competitive interactions with algae, PAF increased along with expression of the gene encoding Lyso-PAF acetyltransferase; the protein responsible for converting Lyso-PAF to PAF. This shows that self and non-self recognition among some of the oldest extant holobionts involve bioactive lipids identical to those in highly derived taxa like humans. This further strengthens the hypothesis that major players of the immune response evolved during the pre-Cambrian.

Depth is used often as a proxy for gradients in energetic resources on coral reefs and for predicting patterns of community energy use. With increasing depth, loss of light can lead to a reduced reliance on autotrophy and an increased reliance on heterotrophy by mixotrophic corals. However, the generality of such trophic zonation varies across contexts. By combining high-resolution oceanographic measurements with isotopic analyses (δ13C, δ15N) of multiple producer and consumer levels across depths (10–30 m) at a central Pacific oceanic atoll, we show trophic zonation in mixotrophic corals can be both present and absent within the same reef system. Deep-water internal waves that deliver cool particulate-rich waters to shallow reefs occurred across all sites (2.5–5.6 events week−1 at 30 m) but the majority of events remained depth-restricted (4.3–9.7% recorded at 30 m propagated to 10 m). In the absence of other particulate delivery, mixotrophs increased their relative degree of heterotrophy with increasing depth. However, where relatively long-lasting downwelling events (1.4–3.3 times the duration of any other site) occurred simultaneously, mixotrophs displayed elevated and consistent degrees of heterotrophy regardless of depth. Importantly, these long-lasting surface pulses were of a lagoonal origin, an area of rich heterotrophic resource supply. Under such circumstances, we hypothesize heterotrophic resource abundance loses its direct linkage with depth and, with resources readily available at all depths, trophic zonation is no longer present. Our results show that fine-scale intra-island hydrographic regimes and hydrodynamic connectivity between reef habitats contribute to explaining the context specific nature of coral trophic depth zonation in shallow reef ecosystems.

From the popularity of authoritarian political leaders to the under-representation of women in boardrooms, leadership is an important theme in current human social affairs. Leadership is also a prominent research topic in the biological, social, and cognitive sciences. However, these active literatures have evolved somewhat independently and there is a need for synthesis. A comparative-evolutionary approach can integrate seemingly divergent perspectives by making a distinction between two leadership styles, prestige and dominance, that have contrasting expressions, functions, histories, and neural and developmental pathways. The distinction may help to resolve various scientific puzzles, such as: (i) opposing views on the different functions and expressions of leadership; (ii) the appeal of dominance-style leaders; and (iii) sex biases in leadership emergence in modern society.

Sesquiterpene scaffolds are the core backbones of many medicinally and industrially important natural products. A plethora of sesquiterpene synthases, widely present in bacteria, fungi, and plants, catalyze the formation of these intricate structures often with multiple stereocenters starting from linear farnesyl diphosphate substrates. Recent advances in next-generation sequencing and metabolomics technologies have greatly facilitated gene discovery for sesquiterpene synthases. However, a major bottleneck limits biochemical characterization of recombinant sesquiterpene synthases: the absolute structural elucidation of the derived sesquiterpene products. Here, we report the identification and biochemical characterization of LphTPS-A, a sesquiterpene synthase from the red macroalga Laurencia pacifica. Using the combination of transcriptomics, sesquiterpene synthase expression in yeast, and microgram-scale nuclear magnetic resonance-coupled crystalline sponge X-ray diffraction analysis, we resolved the absolute stereochemistry of prespatane, the major sesquiterpene product of LphTPS-A, and thereby functionally define LphTPS-A as the first bourbonane-producing sesquiterpene synthase and the first biochemically characterized sesquiterpene synthase from red algae. Our study showcases a workflow integrating multiomics approaches, synthetic biology, and the crystalline sponge method, which is generally applicable for uncovering new terpene chemistry and biochemistry from source-limited living organisms.

Microscopic-scale processes significantly influence benthic marine ecosystems such as coral reefs and kelp forests. Due to the ocean's complex and dynamic nature, it is most informative to study these processes in the natural environment yet it is inherently difficult. Here we present a system capable of non-invasively imaging seafloor environments and organisms in situ at nearly micrometre resolution. We overcome the challenges of underwater microscopy through the use of a long working distance microscopic objective, an electrically tunable lens and focused reflectance illumination. The diver-deployed instrument permits studies of both spatial and temporal processes such as the algal colonization and overgrowth of bleaching corals, as well as coral polyp behaviour and interspecific competition. By enabling in situ observations at previously unattainable scales, this instrument can provide important new insights into micro-scale processes in benthic ecosystems that shape observed patterns at much larger scales.

Abstract Reef‐building corals are mixotrophic organisms that can obtain nutrition from endosymbiotic microalgae (autotrophy) and particle capture (heterotrophy). Heterotrophic nutrition is highly beneficial to many corals, particularly in times of stress. Yet, the extent to which different coral species rely on heterotrophic nutrition remains largely unknown because it is challenging to quantify. We developed a quantitative approach to investigate coral nutrition using carbon isotope (δ 13 C) analysis of six essential amino acids (AA ESS ) in a common Indo‐Pacific coral ( Pocillopora meandrina ) from the fore reef habitat of Palmyra Atoll. We sampled particulate organic matter (POM) and zooplankton as the dominant heterotrophic food sources in addition to the coral host and endosymbionts. We also measured bulk tissue carbon (δ 13 C) and nitrogen (δ 15 N) isotope values of each sample type. Patterns among δ 13 C values of individual AA ESS provided complete separation between the autotrophic (endosymbionts) and heterotrophic nutritional sources. In contrast, bulk tissue δ 13 C and δ 15 N values were highly variable across the putative food sources and among the coral and endosymbiont fractions, preventing accurate estimates of coral nutrition on Palmyra. We used linear discriminant analysis to quantify differences among patterns of AA ESS δ 13 C values, or ‘fingerprints’, of the food resources available to corals. This allowed for the development of a quantitative continuum of coral nutrition that can identify the relative contribution of autotrophic and heterotopic nutrition to individual colonies. Our approach revealed exceptional variation in conspecific colonies at scales of metres to kilometres. On average, 41% of AA ESS in P. meandrina on Palmyra are acquired via heterotrophy, but some colonies appear capable of obtaining the majority of AA ESS from one source or the other. The use of AA ESS δ 13 C fingerprinting analysis offers a significant improvement on the current methods for quantitatively assessing coral trophic ecology. We anticipate that this approach will facilitate studies of coral nutrition in the field, which are essential for comparing coral trophic ecology across taxa and multiple spatial scales. Such information will be critical for understanding the role of heterotrophic nutrition in coral resistance and/or resilience to ongoing environmental change. A free Plain Language Summary can be found within the Supporting Information of this article.

Intergroup conflict is a major evolutionary force shaping animal and human societies. Males and females should, on average, experience different costs and benefits for participating in collective action. Specifically, among mammals, male fitness is generally limited by access to mates whereas females are limited by access to food and safety. Here we analyse sex biases among 72 species of group-living mammals in two contexts: intergroup conflict and collective movements. Our comparative phylogenetic analyses show that the modal mammalian pattern is male-biased participation in intergroup conflict and female-biased leadership in collective movements. However, the probability of male-biased participation in intergroup conflicts decreased and female-biased participation increased with female-biased leadership in movements. Thus, female-biased participation in intergroup conflict only emerged in species with female-biased leadership in collective movements, such as in spotted hyenas and some lemurs. Sex differences are probably attributable to costs and benefits of participating in collective movements (e.g. towards food, water, safety) and intergroup conflict (e.g. access to mates or resources, risk of injury). Our comparative review offers new insights into the factors shaping sex bias in leadership across social mammals and is consistent with the 'male warrior hypothesis' which posits evolved sex differences in human intergroup psychology. This article is part of the theme issue 'Intergroup conflict across taxa'.

A fundamental assumption in predator–prey ecology is that prey responses comprise two main stages: escape when attack occurs or appears imminent and avoid the threat by seeking refuge until it has passed. While numerous studies have examined either initial prey responses to an approaching predator (flight initiation distance, FID), or subsequent hiding behaviour (e.g. latency to resume activity), to our knowledge, no previous studies have repeatedly tested multiple individuals in nature to quantify whether initial escape tendencies, behaviour during the escape and latency to resume activity are repeatable, and whether these stages of the antipredator response are correlated. The goal of this study was to explore how consistent spatial differences in rates of human activity shape risk-sensitive behaviour throughout multiple steps of the antipredator response (to humans) in California ground squirrels, Otospermophilus beecheyi , tested in various group sizes and environmental contexts across time. Our study provides the first example showing that, as predicted: FIDs, latencies to resume activity and other post-FID aspects of prey responses were repeatable and positively correlated at the among-individual level. This correlation is ecologically important in that it provides an underlying mechanism for a trade-off involving not only the cost versus benefit of early versus late escape, or early versus late emergence from refuge, but for a trade-off based on variation in fearfulness expressed across stages. Furthermore, we found that human activity influenced some, but not all, stages of the antipredator response. • Prey face trade-offs across multiple stages of the antipredator response. • We explore repeatability of antipredator responses and correlations between stages. • Human activity influenced some, but not all, stages of the antipredator response. • Multiple stages of the response were repeatable and highly correlated. • Our study offers insights into links between animal behaviour, humans and ecology.

To address claims of human exceptionalism, we determine where humans fit within the greater mammalian distribution of reproductive inequality. We show that humans exhibit lower reproductive skew (i.e., inequality in the number of surviving offspring) among males and smaller sex differences in reproductive skew than most other mammals, while nevertheless falling within the mammalian range. Additionally, female reproductive skew is higher in polygynous human populations than in polygynous nonhumans mammals on average. This patterning of skew can be attributed in part to the prevalence of monogamy in humans compared to the predominance of polygyny in nonhuman mammals, to the limited degree of polygyny in the human societies that practice it, and to the importance of unequally held rival resources to women’s fitness. The muted reproductive inequality observed in humans appears to be linked to several unusual characteristics of our species—including high levels of cooperation among males, high dependence on unequally held rival resources, complementarities between maternal and paternal investment, as well as social and legal institutions that enforce monogamous norms.

MEPS Marine Ecology Progress Series Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsTheme Sections MEPS 302:77-91 (2005) - doi:10.3354/meps302077 Characterization of a large-scale ephemeral bloom of the green alga Cladophora sericea on the coral reefs of West Maui, Hawai’i Jennifer E. Smith1,3,*, John W. Runcie2,4, Celia M. Smith1 1University of Hawai’i Manoa, 3190 Maile Way, Honolulu, Hawai’i 96822, USA2Hawai’i Institute of Marine Biology, PO Box 1346, Kane’ohe, Hawai’i 96744, USA3Present address: National Center for Ecological Analysis and Synthesis, University of California Santa Barbara, 735 State St. Suite 300, Santa Barbara, California 93101, USA4Present address: University of Technology, Sydney, Westbourne St., Gore Hill, New South Wales 2065, Australia *Email: jsmith@nceas.ucsb.edu ABSTRACT: The filamentous green alga Cladophora sericea G. Hudson (Kutzing) has formed episodic and ephemeral nuisance blooms on West Maui’s coral reefs over the past 2 decades. Despite a paucity of evidence, nutrient-rich runoff, groundwater seepage, and upwelling have all been suggested as the cause of these blooms. The goals of this study were to characterize a number of physical and biological variables during a bloom event that occurred during the summer of 2001. We quantified the nutrient environment (water column and sediment porewater), benthic community structure, and herbivore abundance along a depth gradient in an effort to identify factors that may influence bloom dynamics. Further nutrient enrichment and growth experiments were conducted with C. sericea in both the field and the laboratory to determine the response of this alga to enhanced nutrient concentrations. Sediment porewater sampled 0.25 m into the substrate had high concentrations of ammonium, nitrate, and silicate, and low salinity relative to overlying ambient water, suggesting groundwater intrusion was occurring into the sediment interstices. Tissue samples of C. sericea showed elevated nitrogen and δ15N at shallow sites, and these values declined with depth. In situ nutrient enrichments and subsequent determinations of relative electron transport rates (rETR) for C. sericea using chlorophyll fluorescence revealed that some samples were nutrient limited and maximum rates of rETR generally increased with enrichment. Further, algae located at sites with the highest concentrations of dissolved inorganic nitrogen did not respond to nutrient enrichment. Growth rates of up to 25% increase in wet weight d–1 were observed for C. sericea in the laboratory when enriched with commercial fertilizer. The results of this study suggest that the bloom of C. sericea may have been influenced by land-based nutrients via groundwater seepage, but other physical factors are also likely to be involved in the development, persistence and senescence of this dynamic species. KEY WORDS: Algal blooms · Cladophora sericea · Coral reefs · Nutrients · Phase-shifts · Macroalgae Full text in pdf format PreviousNextExport citation RSS - Facebook - Tweet - linkedIn Cited by Published in MEPS Vol. 302. Online publication date: November 04, 2005 Print ISSN: 0171-8630; Online ISSN: 1616-1599 Copyright © 2005 Inter-Research.

Abstract: Trophic cascades triggered by fishing have profound implications for marine ecosystems and the socioeconomic systems that depend on them. With the number of reported cases quickly growing, key features and commonalities have emerged. Fishery‐induced trophic cascades often display differential response times and nonlinear trajectories among trophic levels and can be accompanied by shifts in alternative states. Furthermore, their magnitude appears to be context dependent, varying as a function of species diversity, regional oceanography, local physical disturbance, habitat complexity, and the nature of the fishery itself. To conserve and manage exploited marine ecosystems, there is a pressing need for an improved understanding of the conditions that promote or inhibit the cascading consequences of fishing. Future research should investigate how the trophic effects of fishing interact with other human disturbances, identify strongly interacting species and ecosystem features that confer resilience to exploitation, determine ranges of predator depletion that elicit trophic cascades, pinpoint antecedents that signal ecosystem state shifts, and quantify variation in trophic rates across oceanographic conditions. This information will advance predictive models designed to forecast the trophic effects of fishing and will allow managers to better anticipate and avoid fishery‐induced trophic cascades.

Natural selection is expected to shape phenotypic traits that permit organisms to respond appropriately to the environments in which they live. One important mechanism by which animals cope with changes in their environment is through physiological responses to stressors mediated by glucocorticoid hormones. Here we perform biological and physiological validations of a minimally-invasive technique for assessing fecal corticosterone metabolites (FCMs) in captive and wild groups of yellow-bellied marmots (Marmota flaviventris). Then we draw from ten years of data on these obligate hibernators at the Rocky Mountain Biological Laboratory in Colorado, USA to assess the extent to which seasonal and daily changes explain naturalistic variation in baseline levels of FCMs. Interestingly, beyond important population-level variation with respect to year, season, time of day, sex, age and reproductive state, we found repeatable inter-individual differences in FCMs, suggesting this hormonal trait might be a meaningful target of selection. FCM levels were 68% lower in captive than wild marmots, suggesting that the natural environment in which these animals occur is generally more challenging or less predictable than life in captivity. Most live-trapping events failed to represent stressors for wild marmots such that repeated measurements of traits were possible with minimal “stress” to subjects. We also document the natural ranges of annual and seasonal variation necessary for understanding the extent to which anthropogenic assaults represent stressors for wild mammals. Taken together, this study provides a foundation for understanding the evolution of hormonal traits and has important welfare and conservation implications for field biologists.

Macroalgal blooms of Ulva lactuca and Hypnea musciformis have been problematic in shallow coastal waters around agricultural and urbanized regions of Maui, Hawai'i for decades. Observations have highlighted the correspondence between these blooms and elevated nutrient levels from the adjacent land-use, however little evidence exists regarding the effects of nutrient enrichment on the blooming and non-blooming macroalgae in the area. To determine if elevated nutrient levels influence H. musciformis physiology, we conducted a nutrient enrichment (+N, +P, and +N+P) experiment and measured growth, photosynthetic status, and pigment absorbance. Phycobilin pigments were significantly reduced in the no addition and +P treatment and maintained in those with N additions, suggesting that H. musciformis can use phycobilins to store N. We conducted a second, larger experiment with additions of secondarily-treated wastewater effluent on the bloom forming species Acanthophora spicifera, H. musciformis, and U. lactuca and the common non-bloom forming species, Dictyota acutiloba. All samples were initially depleted of potential N stores and measured for growth, photosynthetic status, and N uptake rates; H. musciformis and U. lactuca were also assessed for micro nutrient uptake, % tissue N, and δ15N values. Growth rates of D. acutiloba, H. musciformis, and U. lactuca increased with increasing % wastewater effluent addition and concentrations of TN and NO3− and those of the bloom forming species were 2-fold higher. All species increased photosynthetic capacity and saturation irradiance with increasing % wastewater effluent addition and concentrations of TN and NO3−. U. lactuca was the most sensitive to low N conditions, evidenced by declines in light capturing efficiency. All species utilized a substantial amount of N over 24 h. H. musciformis and U. lactuca also (1) utilized micro nutrients: iron, manganese, molybdenum, and zinc, (2) decreased % tissue N in low N conditions, (3) increased % tissue N in response to elevated N conditions, and (4) expressed elevated δ15N values with increasing additions of wastewater effluent. These results demonstrate that in Hawai'i, the bloom forming species H. musciformis and U. lactuca, have similar physiological responses to decreased and increased nutrient levels.

Play has been defined as apparently functionless behaviour, yet since play is costly, models of adaptive evolution predict that it should have some beneficial function (or functions) that outweigh its costs. We provide strong evidence for a long-standing, but poorly supported hypothesis: that early social play is practice for later dominance relationships. We calculated the relative dominance rank by observing the directional outcome of playful interactions in juvenile and yearling yellow-bellied marmots (Marmota flaviventris) and found that these rank relationships were correlated with later dominance ranks calculated from agonistic interactions, however, the strength of this relationship attenuated over time. While play may have multiple functions, one of them may be to establish later dominance relationships in a minimally costly way.

Planar optodes were used to visualize oxygen distribution patterns associated with a coral reef associated green algae (Chaetomorpha sp.) and a hermatypic coral (Favia sp.) separately, as standalone organisms, and placed in close proximity mimicking coral-algal interactions. Oxygen patterns were assessed in light and dark conditions and under varying flow regimes. The images show discrete high oxygen concentration regions above the organisms during lighted periods and low oxygen in the dark. Size and orientation of these areas were dependent on flow regime. For corals and algae in close proximity the 2D optodes show areas of extremely low oxygen concentration at the interaction interfaces under both dark (18.4 ± 7.7 µmol O2 L(- 1)) and daylight (97.9 ± 27.5 µmol O2 L(- 1)) conditions. These images present the first two-dimensional visualization of oxygen gradients generated by benthic reef algae and corals under varying flow conditions and provide a 2D depiction of previously observed hypoxic zones at coral algae interfaces. This approach allows for visualization of locally confined, distinctive alterations of oxygen concentrations facilitated by benthic organisms and provides compelling evidence for hypoxic conditions at coral-algae interaction zones.

Diseases threaten the structure and function of marine ecosystems and are contributing to the global decline of coral reefs. We currently lack an understanding of how climate change stressors, such as ocean acidification (OA) and warming, may simultaneously affect coral reef disease dynamics, particularly diseases threatening key reef-building organisms, for example crustose coralline algae (CCA). Here, we use coralline fungal disease (CFD), a previously described CCA disease from the Pacific, to examine these simultaneous effects using both field observations and experimental manipulations. We identify the associated fungus as belonging to the subphylum Ustilaginomycetes and show linear lesion expansion rates on individual hosts can reach 6.5 mm per day. Further, we demonstrate for the first time, to our knowledge, that ocean-warming events could increase the frequency of CFD outbreaks on coral reefs, but that OA-induced lowering of pH may ameliorate outbreaks by slowing lesion expansion rates on individual hosts. Lowered pH may still reduce overall host survivorship, however, by reducing calcification and facilitating fungal bio-erosion. Such complex, interactive effects between simultaneous extrinsic environmental stressors on disease dynamics are important to consider if we are to accurately predict the response of coral reef communities to future climate change.

Synthesis The tissue chemistry of plants can influence ecosystem processes including growth, herbivory, and decomposition. Our comparison of nitrogen and phosphorus in over 1700 autotroph taxa demonstrates that latitudinal trends in tissue chemistry are consistent across non‐vascular and vascular species in freshwater, terrestrial, and marine ecosystems. Tissue chemistry varies most within species and taxonomic lineages, yet the nitrogen to phosphorus ratio within individuals is strikingly similar among species in different ecosystems. These results shed new light on existing hypotheses, suggesting that light (e.g. photon flux) and growing season duration are primary drivers of latitudinal gradients in tissue chemistry, but providing little support for temperature, nutrient supply, or soil substrate age. Photoautotroph nitrogen (N) and phosphorus (P) tissue concentrations can influence ecosystem function via processes including growth, decomposition, and consumption, and may reflect traits maintaining coexistence. Studies in terrestrial systems have led to hypotheses that latitudinal trends in the N and P content of leaves may be driven by soil substrate age, environmental temperature, or season length; however, terrestrial patterns alone cannot differentiate these mechanisms. Here, we demonstrate that broad geographical patterns of N and P in freshwater and marine multicellular photoautotrophs are concordant with those in terrestrial ecosystems. Our &gt; 6800 record database reveals that mean tissue N and P increase with latitude in all ecosystems, but P increases more rapidly, causing N:P to decline; mean N:P scaling within individuals also is identical among systems, despite very different evolutionary environments. A partitioning of the variance in these data suggests that species composition and local environmental context likely lead to the variation observed within a latitudinal band. However, the consistency of trends in photosynthetic tissue chemistry across Earth’s ecosystems suggests that biogeographical gradients in insolation and growing season length may constrain tissue N and P, whereas global trends in temperature, nutrient supply, and soil substrate age are unlikely to generate the consistent latitudinal trends among ecosystems. Thus, this cross‐ecosystem comparison suggests a new hypothesis, global patterns of insolation, while also providing a new perspective on other mechanisms that have been hypothesized to underlie latitudinal trends in photosynthetic tissue chemistry.

Abstract Anthropogenic carbon dioxide (CO2) emissions simultaneously increase ocean temperatures and reduce ocean surface pH, a process termed ocean acidification (OA). OA is expected to negatively affect the growth and physiology of many calcified organisms, but the response of non-calcified (fleshy) organisms is less well understood. Rising temperatures and pCO2 can enhance photosynthetic rates (within tolerance limits). Therefore, warming may interact with OA to alter biological responses of macroalgae in complicated ways. Beyond thresholds of physiological tolerance, however, rising temperatures could further exacerbate negative responses to OA. Many studies have investigated the effects of OA or warming independently of each other, but few studies have quantified the interactive effects of OA and warming on marine organisms. We conducted four short-term independent factorial CO2 enrichment and warming experiments on six common species of calcified and fleshy macroalgae from southern California to investigate the independent and interactive effects of CO2 and warming on growth, carbonic anhydrase (CA) enzyme activity, pigment concentrations, and photosynthetic efficiency. There was no effect of elevated pCO2 on CA activity, pigment concentration, and photosynthetic efficiency in the macroalgal species studies. However, we found that calcareous algae suffered reduced growth rates under high pCO2 conditions alone, although the magnitude of the effect varied by species. Fleshy algae had mixed responses of growth rates to high pCO2, indicating that the effects of pCO2 enrichment are inconsistent across species. The combined effects of elevated pCO2 and warming had a significantly negative impact on growth for both fleshy and calcareous algae; calcareous algae experienced five times more weight loss than specimens in ambient control conditions and fleshy growth was reduced by 76%. Our results demonstrate the need to study the interactive effects of multiple stressors associated with global change on marine communities.

The accuracy and precision of ion sensitive field effect transistor (ISFET) pH sensors have been well documented, but primarily by ocean chemistry specialists employing the technology at single locations. Here we examine their performance in a network context through comparison to discrete measurements of pH, using different configurations of the Honeywell DuraFET pH sensor deployed in six coastal settings by operators with a range of experience. Experience of the operator had the largest effect on performance. The average difference between discrete and ISFET pH was 0.005 pH units, but ranged from −0.030 to 0.083 among operators, with more experienced operators within ±0.02 pH units of the discrete measurement. In addition, experienced operators achieved a narrower range of variance in difference between discrete bottle measurements and ISFET sensor readings compared to novice operators and novice operators had a higher proportion of data failing quality control screening. There were no statistically significant differences in data uncertainty associated with sensor manufacturer or deployment environment (pier-mounted, flowthrough system, and buoy-mounted). The variation we observed among operators highlights the necessity of best practices and training when instruments are to be used in a network where comparison across data streams is desired. However, while opportunities remain for improving the performance of the ISFET sensors when deployed by less experienced operators, the uncertainty associated with their deployment and validation was several-fold less than the observed natural temporal variability in pH, demonstrating the utility of these sensors in tracking local changes in acidification.

Because collective movements have fitness consequences for all participants, group travel can impose conflicts of interest when group-mates vary. Challenges associated with coordinating activities of group-mates, such as during travel, may potentially be mitigated through the use of simple rules governing leadership and other behaviours to minimize conflict. Although individuals living in groups with fission–fusion dynamics may temporarily separate, leadership determination at subsequent reunions, and events occurring during reunions, are poorly understood. Here we investigate leadership during travel prior to reunions of spotted hyaenas, Crocuta crocuta, living in one large social group in the Masai Mara National Reserve, Kenya. Whereas individuals often arrived at dens or joined hunting parties alone, those joining others to participate in group defence of shared resources typically did so when accompanied by group-mates. Although most hyaenas led processions, the attributes of members within each travelling party consistently predicted leadership roles. The highest-ranking adult within each travelling subgroup, often a lactating female, typically assumed the vanguard position prior to reunions. Reunions promoted conflict, particularly at kills. However, as predicted by the conflict mitigation hypothesis, individuals that greeted conspecifics were significantly less likely to fight at reunions than were hyaenas that failed to greet at reunions. Thus, whereas temporary separations may reduce immediate conflicts of interest in fission–fusion societies, hyaenas pay consensus costs at subsequent reunions, particularly in the context of feeding competition, and greetings appear to reduce such costs. Finally, we propose a novel scheme for leadership categorization in which leadership depends on whether or not leadership is based on specific attributes of individual group members. We apply this attribute-based framework to quantify the patterns and mechanisms of leadership during group travel for 52 species of mammals, including the spotted hyaenas studied here, and place findings in a broad evolutionary context.

The natural beauty of coral reefs attracts millions of tourists worldwide resulting in substantial revenues for the adjoining economies. Although their visual appearance is a pivotal factor attracting humans to coral reefs current monitoring protocols exclusively target biogeochemical parameters, neglecting changes in their aesthetic appearance. Here we introduce a standardized computational approach to assess coral reef environments based on 109 visual features designed to evaluate the aesthetic appearance of art. The main feature groups include color intensity and diversity of the image, relative size, color, and distribution of discernable objects within the image, and texture. Specific coral reef aesthetic values combining all 109 features were calibrated against an established biogeochemical assessment (NCEAS) using machine learning algorithms. These values were generated for ∼2,100 random photographic images collected from 9 coral reef locations exposed to varying levels of anthropogenic influence across 2 ocean systems. Aesthetic values proved accurate predictors of the NCEAS scores (root mean square error < 5 for N ≥ 3) and significantly correlated to microbial abundance at each site. This shows that mathematical approaches designed to assess the aesthetic appearance of photographic images can be used as an inexpensive monitoring tool for coral reef ecosystems. It further suggests that human perception of aesthetics is not purely subjective but influenced by inherent reactions towards measurable visual cues. By quantifying aesthetic features of coral reef systems this method provides a cost efficient monitoring tool that targets one of the most important socioeconomic values of coral reefs directly tied to revenue for its local population.

Although cooperation represents a long-standing evolutionary puzzle, field studies on social carnivores have contributed greatly to our understanding of the selective forces favoring cooperative breeding. Despite these insights, our grasp of the proximate mechanisms facilitating cooperation in carnivores remains surprisingly limited. Here we provide an overview of our current knowledge of the endocrine mechanisms mediating cooperative breeding in terrestrial species belonging to the mammalian order Carnivora. We focus primarily on aspects of reproductive suppression and alloparental care. We find few studies on the topic, with some of the best studies focusing on the behavioral endocrinology of cooperative breeding in canids (dogs) and herpestids (mongooses). Overall, these studies suggest that breeding females typically have higher circulating levels of estrogen, luteinizing hormone, progesterone, and prolactin than do non-breeding adult females. We also find that among males, testosterone levels are often elevated in breeders compared to non-breeding adult males. The effect of glucocorticoids on reproductive suppression in carnivores appears to be sex-specific: breeding males typically have higher glucocorticoid levels than their non-breeding subordinates, but there is no clear pattern for breeding females. Finally, elevated levels of prolactin and oxytocin are consistently associated with alloparental care in cooperatively breeding carnivores, whereas testosterone and glucocorticoids are often lower in individuals who participate in alloparenting. Taken together, our synthesis elucidates striking gaps in our knowledge of carnivore physiology, especially the endocrine mechanisms promoting alloparental care, and we identify important areas for future research.

Abstract Ocean warming is causing declines of coral reefs globally, raising critical questions about the potential for corals to adapt. In the central equatorial Pacific, reefs persisting through recurrent El Niño heatwaves hold important clues. Using an 18‐year record of coral cover spanning three major bleaching events, we show that the impact of thermal stress on coral mortality within the Phoenix Islands Protected Area (PIPA) has lessened over time. Disproportionate survival of extreme thermal stress during the 2009–2010 and 2015–2016 heatwaves, relative to that in 2002–2003, suggests that selective mortality through successive heatwaves may help shape coral community responses to future warming. Identifying and facilitating the conditions under which coral survival and recovery can keep pace with rates of warming are essential first steps toward successful stewardship of coral reefs under 21st century climate change.

The extent of (in)equality is highly diverse across species of social mammals, but we have a poor understanding of the factors that produce or inhibit equitable social organizations. Here, we adopt a comparative evolutionary perspective to test whether the evolution of social dominance hierarchies, a measure of social inequality in animals, exhibits phylogenetic conservatism and whether interspecific variation in these traits can be explained by sex, age or captivity. We find that hierarchy steepness and directional consistency evolve rapidly without any apparent constraint from evolutionary history. Given this extraordinary variability, we next consider multiple factors that have evolved to mitigate social inequality. Social networks, coalitionary support and knowledge transfer advantage to privilege some individuals over others. Nutritional access and prenatal stressors can impact the development of offspring, generating health disparities with intergenerational consequences. Intergenerational transfer of material resources (e.g. stone tools, food stashes, territories) advantage those who receive. Nonetheless, many of the same social species that experience unequal access to food (survival) and mates (reproduction) engage in levelling mechanisms such as food sharing, adoption, revolutionary coalitions, forgiveness and inequity aversion. Taken together, mammals rely upon a suite of mechanisms of (in)equality to balance the costs and benefits of group living. This article is part of the theme issue 'Evolutionary ecology of inequality'.

The red alga Gracilaria salicornia (C. Agardh) E. Y. Dawson was introduced intentionally to two reefs on O'ahu, Hawai'i, in the 1970s for experimental aquaculture for the agar industry. Some 30 yr later, this species has spread from the initial sites of introduction and is now competing with native marine flora and fauna. The goals of this study were to quantify various aspects of G. salicornia ecology in Hawai'i in an effort to develop control or eradication tools. Experimental plots were established to determine cover and biomass of G. salicornia per square meter and to determine the amount of time and person hours needed to remove G. salicornia from these plots. Substantial amounts of G. salicornia become dislodged from the reef during large wave events and periodically become deposited onto the beach in front of the Waikiki Aquarium. Algal beach wash biomass was quantified and positive relationships were established between swell height and the amount of algae that washed up onto the beach in this location. We then quantified the ability of G. salicornia vegetative fragments to regrow after desiccation to determine if algal biomass stranded on shore survives the tidal cycle until being washed back out on the reef at high tide. Gracilaria salicornia was remarkably resistant to temperature, salinity, and chemical treatments examined as possible in situ control options. Herbivore preference tests showed that a native Gracilaria species is consumed far more frequently than the alien congener. Finally, large-scale community volunteer efforts were organized to remove drifting G. salicornia fragments from the reef area in front of the Waikiki Aquarium. Over 20,000 kg of alien algal fragments were removed from this location in five 4-hr cleanup events. However, based on G. salicornia growth rates, ability to fragment, physical tolerance, and low herbivory, it is clear that a large-scale dedicated effort will be needed to control this invasive species on Waikiki's reefs.

We conducted a field experiment that manipulated landscapes by mowing so that the amount of unfavorable habitat (low cover) for prairie voles ( Microtus ochrogaster ) increased while the number and size of favorable patches (high cover) remained constant. Distance between favorable patches increased as the amount of unfavorable habitat increased, so we could test two current hypotheses concerning the effect of habitat fragmentation on local populations: 1) increased distance between favorable habitat patches reduces successful per capita dispersal (emigration and immigration) because dispersers suffer greater exposure to predators (the predation hypothesis); and 2) per capita dispersal is inversely density dependent in voles because increased aggression at higher density inhibits movements (the social fence hypothesis). As predicted by the predation hypothesis, increased distance between favorable habitat patches led to decreased successful dispersal among patches and increased per capita mortality, particularly among subadult and adult males (the categories of voles most likely to emigrate). As predicted by the social fence hypothesis, dispersal was inversely density dependent, and dispersing voles displayed a greater frequency of wounding (an indication of increased aggressive interactions) than did residents. The amount of wounding in general did not increase with density, however, and, as distance between patches increased to 60 m, successful dispersal became rare and erratic. Nevertheless, our overall results supported current hypotheses regarding the effects of increased habitat fragmentation on patterns of dispersal and mortality. Examining the impact of these effects on local population dynamics within different landscapes will require longer periods of observation.

Periodically, the marine cyanobacterium Leptolyngbya crossbyana forms extensive blooms on Hawai'ian coral reefs and results in significant damage to the subtending corals. Additionally, corals near mats of this cyanobacterium, but not directly overgrown, have been observed to undergo bleaching. Therefore, samples of this cyanobacterium were chemically investigated for bioactive secondary metabolites that might underlie this toxicity phenomenon. 1H NMR spectroscopy-guided fractionation led to the isolation of four heptabrominated polyphenolic ethers, crossbyanols A−D (1−4). Structure elucidation of these compounds was made challenging by their very low proton to carbon (H/C) ratio, but was completed by combining standard NMR and MS data with 2 Hz-optimized HMBC data. Derivatization of crossbyanol A as the diacetate assisted in the assignment of its structure. Crossbyanol B (2) showed antibiotic activity with an MIC value of 2.0−3.9 μg/mL against methicillin-resistant Staphylococcus aureus (MRSA) and relatively potent brine shrimp toxicity (IC50 2.8 ppm).

Large animals are severely depleted in many ecosystems, yet we are only beginning to understand the ecological implications of their loss. To empirically measure the short-term effects of removing large animals from an ocean ecosystem, we used exclosures to remove large fish from a near-pristine coral reef at Palmyra Atoll, Central Pacific Ocean. We identified a range of effects that followed from the removal of these large fish. These effects were revealed within weeks of their removal. Removing large fish (1) altered the behavior of prey fish; (2) reduced rates of herbivory on certain species of reef algae; (3) had both direct positive (reduced mortality of coral recruits) and indirect negative (through reduced grazing pressure on competitive algae) impacts on recruiting corals; and (4) tended to decrease abundances of small mobile benthic invertebrates. Results of this kind help advance our understanding of the ecological importance of large animals in ecosystems.

MEPS Marine Ecology Progress Series Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsTheme Sections MEPS 532:41-57 (2015) - DOI: https://doi.org/10.3354/meps11344 Quantifying scales of spatial variability in algal turf assemblages on coral reefs J. L. Harris*, L. S. Lewis, J. E. Smith Center for Marine Biodiversity & Conservation, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California 92037, USA *Corresponding author: jill@ucsd.edu ABSTRACT: Quantifying variability over multiple spatial scales is a fundamental goal in ecology, providing insight into which scale-dependent processes most strongly influence community structure. On coral reefs, the ubiquitous turf algae are the primary food source for herbivores and competitors for space with corals. Turf algae will likely increase in the future, because they thrive under conditions that reduce coral cover. Turfs are typically treated as a single homogeneous functional group, but analyzing them as a variable assemblage is more informative. We used a hierarchical sampling design to quantify 4 scales of variability in turf assemblages from centimeters (within single dead coral heads) to kilometers (across islands) on the rarely studied Lhaviyani Atoll, Maldives. We used 4 metrics, each reflecting different ecological processes: percent cover, canopy height, richness, and assemblage composition. For most of these metrics, variability was significant at multiple spatial scales. However, for all metrics, the smallest scale (centimeters) explained the greatest proportion of overall variability. The least variability in cover, canopy height, and richness occurred among sites (100s meters), suggesting that processes such as competition, predation, and vegetative growth are heterogeneous at small scales. In contrast, assemblage composition was least variable at the largest scale (kilometers), suggesting that oceanographic processes or a well-mixed propagule supply reduce variability. With declining coral and increasing cover of turf on reefs worldwide, it will become increasingly important to understand the dynamics of coral-turf competitive interactions. However, because turf assemblages are highly variable at small spatial scales, these interactions require more detailed consideration. KEY WORDS: Epilithic algal matrix · Spatial variability · Algal assemblage · Patchiness · Hierarchical analysis Full text in pdf format PreviousNextCite this article as: Harris JL, Lewis LS, Smith JE (2015) Quantifying scales of spatial variability in algal turf assemblages on coral reefs. Mar Ecol Prog Ser 532:41-57. https://doi.org/10.3354/meps11344 Export citation RSS - Facebook - Tweet - linkedIn Cited by Published in MEPS Vol. 532. Online publication date: July 21, 2015 Print ISSN: 0171-8630; Online ISSN: 1616-1599 Copyright © 2015 Inter-Research.

On many coral reefs, herbivorous fish play an essential role in regulating algal growth and influencing the outcome of coral-algal competition.Working on a remote predator-dominated coral reef on Palmyra Atoll, USA, we used behavioral foraging observations to quantify the roles of common parrotfish and surgeonfish in the roving herbivore guild.We recorded species-specific bite rates on different benthic organisms, quantified the relative abundance of those benthic organisms, and estimated benthos-specific grazing intensities as a function of bite rates, fish abundance, and percent cover.These grazing metrics were compared between the exposed fore reef (~10 m depth) and protected reef terrace (~5 m depth) habitats.We observed large differences in feeding rates and substrate selectivity among fish species.Most species fed predominately on algal turfs; however, some species foraged broadly among fleshy macroalgal taxa, while others specialized on calcified green algae of the genus Halimeda.The highest bite rates were recorded from species targeting algal turfs, while the highest rates of defecation were recorded from species targeting Halimeda.Per capita bite rates of all species were higher in the fore reef habitat (mean 45% more bites min -1 ); however, overall grazing intensities on turf algae (bites cm -2 d -1 ) were 5 times higher on the reef terrace than on the fore reef.Despite habitat-specific differences in the herbivore assemblages, the estimated distribution of total bites showed consistency among habitats, with strong guild-level positive foraging selectivity for algal turf.Comparisons of bite and defecation rate data for these herbivores across the Indo-Pacific highlight phylogenetic constraints on grazing activities.Overall, this study illustrates the importance of herbivore functional redundancy, variability in species-specific grazing, and provides a framework for assessing guildwide grazing impacts on coral reefs.

Many animals socialize in two or more major ecological contexts. In nature, these contexts often involve one situation in which space is more constrained (e.g. shared refuges, sleeping cliffs, nests, dens or burrows) and another situation in which animal movements are relatively free (e.g. in open spaces lacking architectural constraints). Although it is widely recognized that an individual's characteristics may shape its social life, the extent to which architecture constrains social decisions within and between habitats remains poorly understood. Here we developed a novel, automated-monitoring system to study the effects of personality, life-history stage and sex on the social network structure of a facultatively social mammal, the California ground squirrel ( Otospermophilus beecheyi ) in two distinct contexts: aboveground where space is relatively open and belowground where it is relatively constrained by burrow architecture. Aboveground networks reflected affiliative social interactions whereas belowground networks reflected burrow associations. Network structure in one context (belowground), along with preferential juvenile–adult associations, predicted structure in a second context (aboveground). Network positions of individuals were generally consistent across years (within contexts) and between ecological contexts (within years), suggesting that individual personalities and behavioural syndromes, respectively, contribute to the social network structure of these free-living mammals. Direct ties (strength) tended to be stronger in belowground networks whereas more indirect paths (betweenness centrality) flowed through individuals in aboveground networks. Belowground, females fostered significantly more indirect paths than did males. Our findings have important potential implications for disease and information transmission, offering new insights into the multiple factors contributing to social structures across ecological contexts. This article is part of the theme issue ‘Interdisciplinary approaches for uncovering the impacts of architecture on collective behaviour’.

Abstract On coral reefs, microorganisms are essential for recycling nutrients to primary producers through the remineralization of benthic-derived organic matter. Diel investigations of reef processes are required to holistically understand the functional roles of microbial players in these ecosystems. Here we report a metagenomic analysis characterizing microbial communities in the water column overlying 16 remote forereef sites over a diel cycle. Our results show that microbial community composition is more dissimilar between day and night samples collected from the same site than between day or night samples collected across geographically distant reefs. Diel community differentiation is largely driven by the flux of Psychrobacter sp., which is two-orders of magnitude more abundant during the day. Nighttime communities are enriched with species of Roseobacter , Halomonas , and Alteromonas encoding a greater variety of pathways for carbohydrate catabolism, further illustrating temporal patterns of energetic provisioning between different marine microbes. Dynamic diel fluctuations of microbial populations could also support the efficient trophic transfer of energy posited in coral reef food webs.

Population distributions are affected by a variety of spatial processes, including dispersal, intraspecific dynamics and habitat selection. Within reef‐building coral communities, these processes are especially important during the earliest life stages when reproduction provides mobility among sessile organisms and populations experience the greatest mortality bottlenecks both before and immediately after settlement. Here, we used large‐area imaging to create photomosaics that allowed us to identify and map the location of 4681 juvenile (1–5 cm diameter) and 25 902 adult (&gt;5 cm diameter) coral colonies from eight 100‐m 2 plots across the forereef of Palmyra Atoll. Using metrics of density, percent cover and the relative location of each colony within each plot, we examined abundance and spatial relationships between juvenile and adult coral taxa. Within coral taxa, juvenile density was generally positively related to the numerical density and percent cover of adults. Nearest neighbor analyses showed aggregation of juveniles near adults of the same taxon for two of the focal taxa ( Pocillopora and Fungiids), while all other taxa showed random spatial patterning relative to adults. Three taxa had clustered distributions of juveniles overall. Additionally, we found that on a colony level, juveniles for five of nine focal taxa (accounting for &gt;98% of all identified juveniles) associated with a specific habitat type, with four of those five taxa favoring unconsolidated (e.g. rubble) over consolidated substrata. The general lack of clustering in juvenile corals contrasts with consistent clustering patterns seen in adult corals, suggesting that adult spatial patterns are largely driven by processes occurring after maturity such as partial colony mortality, including fission and fragmentation. The association of many taxa with unconsolidated habitat also suggests that corals may play an important role in colonizing natural rubble patches that could contribute to reef stabilization over time.

Marine macroalgae, seaweeds, are exceptionally prolific producers of halogenated natural products. Biosynthesis of halogenated molecules in seaweeds is inextricably linked to reactive oxygen species (ROS) signaling as hydrogen peroxide serves as a substrate for haloperoxidase enzymes that participate in the construction these halogenated molecules. Here, using red macroalga Asparagopsis taxiformis, a prolific producer of the ozone depleting molecule bromoform, we provide the discovery and biochemical characterization of a ROS-producing NAD(P)H oxidase from seaweeds. This discovery was enabled by our sequencing of Asparagopsis genomes, in which we find the gene encoding the ROS-producing enzyme to be clustered with genes encoding bromoform-producing haloperoxidases. Biochemical reconstitution of haloperoxidase activities establishes that fatty acid biosynthesis can provide viable hydrocarbon substrates for bromoform production. The ROS production haloperoxidase enzymology that we describe here advances seaweed biology and biochemistry by providing the molecular basis for decades worth of physiological observations in ROS and halogenated natural product biosyntheses.

Women remain universally underrepresented in the top leadership positions. A comparative evolutionary framework may offer new insights into the value of and potential barriers to female leadership. Here we define leaders as individuals who impose a disproportional influence on the collective behaviors of group members. We reviewed data for 76 social species of non-human mammals to reveal the circumstances favoring female leadership and species exhibiting female-biased leadership in two or more contexts (e.g., collective movements, group foraging, conflict resolution within groups, or conflicts between groups). Although rare across the lineage, female-biased leadership is pervasive in killer whales, lions, spotted hyenas, bonobos, lemurs, and elephants; leaders emerge without coercion and followers benefit from the social support and/or ecological knowledge from elder females. Our synthesis elucidates barriers to female leadership, but also reveals that traditional operationalizations of leadership are themselves male-biased. We therefore propose a new agenda for assessing the overlooked ways that females exert influence in groups.

Field-based cultivation of Kappaphycus and Eucheuma seaweeds is widespread across the tropics and is largely done to extract the polysaccharide carrageenan, which is used in commercial applications. Although such seaweed farming has been cited as a sustainable alternative livelihood to destructive fishing, there has not been a comprehensive review of its environmental impacts to assess its potential conservation benefit. We reviewed the peer-reviewed and industry gray literature to determine what is known about seaweed farming techniques and their impacts on local ecosystems, organisms, and ecosystem services. We identified 43 tropical or subtropical countries that are currently cultivating or have cultivated carrageenophytes. Ecosystem impacts of seaweed farming were measured directly in 33 publications with variable results. Placement of seaweed farms above seagrass beds led to reduced productivity and shoot density in 5 studies and reduced or altered meiofaunal abundance and diversity in 6 studies. On coral reefs, overgrowth of corals by farmed seaweed species was documented in 8 cases. Two studies showed changes to herbivorous fish communities in adjacent areas because seaweed farms changed the environment, whereas in 2 studies measures of overall abundance or diversity did not change. The impacts of seaweed farming may not be as destructive as some other human activities, but they should still be considered when establishing new farms or managing existing farm sites. Our findings are consistent with suggestions to mitigate impact on local ecosystems by shifting seaweed farms to deeper, sandy-bottom areas. However, some of these changes may adversely affect farmers and associated communities.Impactos e Implicaciones Ambientales del Cultivo de Algas Marinas Carragenofitas Tropicales Resumen El cultivo de las algas marinas Kappaphycus y Eucheuma se encuentra distribuido extensamente en los trópicos y generalmente se realiza para extraer el polisacárido carragenano, el cual se usa en la industria comercial. Aunque se ha mencionado que dicho cultivo de algas marinas es una alternativa sustentable para la pesca destructiva como medio de subsistencia, no se ha realizado una revisión completa de sus impactos ambientales para evaluar su potencial beneficio de conservación. Analizamos la literatura gris y la revisada por pares sobre la industria para determinar qué se conoce sobre las técnicas de cultivo de algas marinas y sus impactos sobre los ecosistemas locales, organismos y servicios ambientales. Identificamos 43 países tropicales o subtropicales que actualmente cultivan o han cultivado carragenofitas. Medimos los impactos ambientales del cultivo de algas marinas de manera directa en 33 publicaciones con resultados variables. La colocación de granjas de algas marinas por encima de lechos de pasto marino derivó en una productividad reducida y en una densidad observada en cinco estudios. En seis estudios, esta colocación derivó en una reducción o alteración de la abundancia y diversidad de meiofauna. En los arrecifes de coral, se documentó en ocho casos la proliferación de corales por causa de las especies cultivadas de algas marinas. Dos estudios mostraron cambios en las comunidades de peces herbívoros de las áreas circundantes debido al cambio en el ambiente generado por los cultivos de algas marinas, mientras que, en otros dos estudios, las medidas de la abundancia o diversidad generalizadas no cambió. Los impactos del cultivo de algas marinas pueden no ser tan destructivos como otras actividades humanas, pero todavía deberían considerarse durante el establecimiento de nuevas granjas o durante el manejo de los sitios de cultivo existentes. Nuestros hallazgos van a la par de las sugerencias actuales para mitigar el impacto sobre los ecosistemas locales mediante la reubicación de las granjas de algas marinas a áreas más profundas con un lecho arenoso. Sin embargo, algunos de estos cambios podrían afectar negativamente a los cultivadores y a las comunidades asociadas.

Abstract Photosynthetic microalgae are an attractive source of food, fuel, or nutraceuticals, but commercial production of microalgae is limited by low spatial efficiency. In the present study we developed a simple photosynthetic hydrogel system that cultivates the green microalga, Marinichlorella kaistiae KAS603, together with a novel strain of the bacteria, Erythrobacter sp. We tested the performance of the co-culture in the hydrogel using a combination of chlorophyll- a fluorimetry, microsensing, and bio-optical measurements. Our results showed that growth rates in algal–bacterial hydrogels were about threefold enhanced compared to hydrogels with algae alone. Chlorophyll- a fluorimetry–based light curves found that electron transport rates were enhanced about 20% for algal–bacterial hydrogels compared to algal hydrogels for intermediate irradiance levels. We also show that the living hydrogel is stable under different environmental conditions and when exposed to natural seawater. Our study provides a potential bio-inspired solution for problems that limit the space-efficient cultivation of microalgae for biotechnological applications.