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Benjamin Tannenwald

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DOI: 10.3389/fimmu.2023.1228812
2023
Common methodological pitfalls in ICI pneumonitis risk prediction studies
Background Pneumonitis is one of the most common adverse events induced by the use of immune checkpoint inhibitors (ICI), accounting for a 20% of all ICI-associated deaths. Despite numerous efforts to identify risk factors and develop predictive models, there is no clinically deployed risk prediction model for patient risk stratification or for guiding subsequent monitoring. We believe this is due to systemic suboptimal approaches in study designs and methodologies in the literature. The nature and prevalence of different methodological approaches has not been thoroughly examined in prior systematic reviews. Methods The PubMed, medRxiv and bioRxiv databases were used to identify studies that aimed at risk factor discovery and/or risk prediction model development for ICI-induced pneumonitis (ICI pneumonitis). Studies were then analysed to identify common methodological pitfalls and their contribution to the risk of bias, assessed using the QUIPS and PROBAST tools. Results There were 51 manuscripts eligible for the review, with Japan-based studies over-represented, being nearly half (24/51) of all papers considered. Only 2/51 studies had a low risk of bias overall. Common bias-inducing practices included unclear diagnostic method or potential misdiagnosis, lack of multiple testing correction, the use of univariate analysis for selecting features for multivariable analysis, discretization of continuous variables, and inappropriate handling of missing values. Results from the risk model development studies were also likely to have been overoptimistic due to lack of holdout sets. Conclusions Studies with low risk of bias in their methodology are lacking in the existing literature. High-quality risk factor identification and risk model development studies are urgently required by the community to give the best chance of them progressing into a clinically deployable risk prediction model. Recommendations and alternative approaches for reducing the risk of bias were also discussed to guide future studies.
2015
Vector Boson Plus Jets Measurements with the ATLAS Detector
2016
Measurement of the W Boson Helicity Fractions in $t\bar{t}$ Events at $\sqrt{s}$=8 TeV in the Lepton+Jets Channel with ATLAS
2017
Measurement of W-Helicity Fractions in $t\bar{t}$ decays and Search for Exotic Dihiggs Production in the $b\bar{b}WW^*$ Decay Channel Using the ATLAS Detector
DOI: 10.2172/1418446
2018
Fermilab Test Beam Facility Annual Report FY17
This Technical Memorandum (TM) summarizes the Fermilab Test Beam operations for FY2017. It is one of a series of annual publications intended to gather information in one place. In this case, the information concerns the individual experiments that ran at FTBF and are listed in Table 1. Each experiment section was prepared by the relevant authors, and was edited for inclusion in this summary.
DOI: 10.48550/arxiv.2009.06754
2020
Benchmarking Machine Learning Techniques with Di-Higgs Production at the LHC
Many domains of high energy physics analysis are starting to explore machine learning techniques. Powerful methods can be used to identify and measure rare processes from previously insurmountable backgrounds. One of the most profound Standard Model signatures still to be discovered at the LHC is the pair production of Higgs bosons through the Higgs self-coupling. The small cross section of this process makes detection very difficult even for the decay channel with the largest branching fraction ($hh\rightarrow b\bar{b}b\bar{b}$). This paper benchmarks a variety of approaches (boosted decision trees, various neural network architectures, semi-supervised algorithms) against one another to catalog a few of the various techniques available to high energy physicists as the era of the HL-LHC approaches.
DOI: 10.2172/1668714
2019
Fermilab Test Beam Facility Annual Report (FY2019)
This Technical Memorandum (TM) summarizes the Fermilab Test Beam Faciltiy (FTBF) operations for FY2019. It is one of a series of annual publications intended to gather information in one place. This TM discusses the experiments performed at the Test Beam from November 2018 to July 2019. The experiments are listed in Table 1. Each experiment wrote a summary that was edited for clarity and is included in this report.