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ISSN: 0022-2836

Journal of Molecular Biology

Publisher: Elsevier

DOI: 10.1016/s0022-2836(22)00249-2
Journal of Molecular Biology ·
2022
Editorial Board
Editorial board
Computational biology
Biology
DOI: 10.1016/s0022-2836(22)00171-1
Journal of Molecular Biology ·
2022
Outside Front Cover
Front cover
Front (military)
Cover (algebra)
DOI: 10.1016/s0022-2836(22)00174-7
Journal of Molecular Biology ·
2022
Editorial Board
Chemistry
DOI: 10.1016/j.jmb.2022.167620
Journal of Molecular Biology ·
2022
Engineered Allosteric Regulation of Protein Function
Jordan Fauser, Nicholas Leschinsky, Barbara N. Szynal, Andrei V. Karginov
Allosteric regulation
Computational biology
Function (biology)
DOI: 10.1016/s0022-2836(22)00191-7
Journal of Molecular Biology ·
2022
Outside Front Cover
Front cover
Front (military)
Cover (algebra)
DOI: 10.1016/j.jmb.2022.167623
Journal of Molecular Biology ·
2022
Directed inter-domain motions enable the IsdH Staphylococcus aureus receptor to rapidly extract heme from human hemoglobin
Joseph Clayton, Kat Ellis-Guardiola, Brendan J. Mahoney, Jess Soule, Robert T. Clubb, Jeff Wereszczynski
Heme
Linker
Globin
DOI: 10.1016/s0022-2836(22)00194-2
Journal of Molecular Biology ·
2022
Editorial Board
Chemistry
Computational biology
DOI: 10.1016/j.jmb.2022.167621
Journal of Molecular Biology ·
2022
Step-by-Step Regulation of Productive and Abortive Transcription Initiation by Pyrophosphorolysis
Dylan Plaskon, Claire Evensen, Kate Henderson, Benjamin Palatnik, Takahiro Ishikuri, Hao-Che Wang, Sarah Doughty, M. Thomas Record
RNA polymerase
Abortive initiation
Transcription (linguistics)
DOI: 10.1016/j.jmb.2022.167597
Journal of Molecular Biology ·
2022
Deep learning to predict the biosynthetic gene clusters in bacterial genomes
Mingyang Liu, Yun Li, Hongzhe Li
Bacterial genome size
Genome
Gene
DOI: 10.1016/j.jmb.2022.167622
Journal of Molecular Biology ·
2022
Biophysical fitness landscape of the SARS-CoV-2 Delta variant receptor binding domain
Casey Patrick, Vaibhav Upadhyay, Alexandra Lucas, Krishna M.G. Mallela
Mutant
Antibody
Mutation
DOI: 10.1016/j.jmb.2022.167632
Journal of Molecular Biology ·
2022
A Test and Refinement of Folding Free Energy Nearest Neighbor Parameters for RNA Including N6-Methyladenosine
Marta Szabat, Martina Prochota, Ryszard Kierzek, Elzbieta Kierzek, David H. Mathews
Folding (DSP implementation)
RNA
Context (archaeology)
DOI: 10.1016/j.jmb.2022.167635
Journal of Molecular Biology ·
2022
Computational approaches for RNA structure ensemble deconvolution from structure probing data
Sharon Aviran, Danny Incarnato
RNA
Nucleic acid structure
Conformational ensembles
DOI: 10.1016/j.jmb.2022.167629
Journal of Molecular Biology ·
2022
Interactions between membraneless condensates and membranous organelles at the presynapse: a phase separation view of synaptic vesicle cycle
Xiandeng Wu, Hua Qiu, Mingjie Zhang
Synaptic vesicle
Organelle
Vesicle
DOI: 10.1016/j.jmb.2022.167643
Journal of Molecular Biology ·
2022
Disordered regions flanking the binding interface modulate affinity between CBP and NCOA
Elin Karlsson, Jan Schnatwinkel, Cristina Paissoni, Eva Andersson, Christian Herrmann, Carlo Camilloni, Per Jemth
Intrinsically disordered proteins
Flanking maneuver
Protein–protein interaction
DOI: 10.1016/j.jmb.2022.167636
Journal of Molecular Biology ·
2022
Proteomic characterization of a candidate polygenic driver of metabolism in non-small cell lung cancer
Heba Badr, Ron Blutrich, Kaitlin Chan, Jiefei Tong, Paul Taylor, Wen Zhang, Ran Kafri, Hannes L. Röst, Ming-Sound Tsao, Michael F. Moran
Interactome
Biology
Downregulation and upregulation
DOI: 10.1016/j.jmb.2022.167642
Journal of Molecular Biology ·
2022
Structural, functional and computational studies of membrane recognition by Plasmodium Perforin-Like Proteins 1 and 2
Sophie I. Williams, Xiulian Yu, Tao Ni, Robert J.C. Gilbert, Phillip J. Stansfeld
Biology
Cell biology
Membrane protein
DOI: 10.1016/j.jmb.2022.167626
Journal of Molecular Biology ·
2022
Therapeutic Targeting the Allosteric Cysteinome of RAS and Kinase Families
Lianbo Li, Cynthia Meyer, Zhi-Wei Zhou, Ammar Elmezayen, Kenneth Westover
Allosteric regulation
Drug discovery
Computational biology
DOI: 10.1016/j.jmb.2022.167625
Journal of Molecular Biology ·
2022
Computational Resources for Molecular Biology 2022
Rita Casadio, David H Mathews, Michael J.E. Sternberg
Computational biology
Biology
Evolutionary biology
DOI: 10.1016/j.jmb.2022.167631
Journal of Molecular Biology ·
2022
Structural changes in aptamers are essential for synthetic riboswitch engineering
Janis Hötzel, Beatrix Suess
Aptamer
Riboswitch
Systematic evolution of ligands by exponential enrichment
DOI: 10.1016/j.jmb.2022.167628
Journal of Molecular Biology ·
2022
Validation of an allosteric binding site of Src kinase identified by unbiased ligand binding simulations
Victoria R. Mingione, Zachariah Foda, YiTing Paung, Hannah Philipose, Aziz M. Rangwala, Yibing Shan, Markus A. Seeliger
Allosteric regulation
Druggability
Allosteric enzyme
DOI: 10.1016/j.jmb.2022.167630
Journal of Molecular Biology ·
2022
Spn1 and its dynamic interactions with Spt6, histones and nucleosomes
Sha Li, Garrett Edwards, Catherine A. Radebaugh, Karolin Luger, Laurie A.Stargell
Nucleosome
Histone H4
Histone
DOI: 10.1016/j.jmb.2022.167637
Journal of Molecular Biology ·
2022
An electrostatically-steered conformational selection mechanism promotes SARS-CoV-2 Spike protein variation
Marija Sorokina, Jaydeep Belapure, Christian Tüting, Reinhard Paschke, Ioannis Papasotiriou, João Pglm Rodrigues, Panagiotis L. Kastritis
Trimer
Lipid bilayer fusion
Protein structure
DOI: 10.1016/j.jmb.2022.167638
Journal of Molecular Biology ·
2022
Electrostatics drive the molecular chaperone BiP to preferentially bind oligomerized states of a client protein
Erin E. Deans, Judy L.M. Kotler, Wei-Shao Wei, Timothy O. Street
Oligomer
Peptide
Monomer
DOI: 10.1016/j.jmb.2022.167640
Journal of Molecular Biology ·
2022
Inadequacy of evolutionary profiles vis-a-vis single sequences in predicting transient DNA-binding sites in proteins
Ajay Arya, Dana Mary Varghese, Ajay Kumar Verma, Shandar Ahmad
DNA
DNA binding site
Binding site
DOI: 10.1016/j.jmb.2022.167633
Journal of Molecular Biology ·
2022
Conformational dynamics of the hepatitis B virus pre-genomic RNA on multiple time scales: implications for viral replication
Lukasz T. Olenginski, Wojciech K. Kasprzak, Christina Bergonzo, Bruce A. Shapiro, Theodore K. Dayie
RNA
Biology
Viral replication