Stephen F. Altschul

National Center for Biotechnology Information

Here are all the papers by Stephen F. Altschul that you can download and read on OA.mg.
Stephen F. Altschul’s last known institution is National Center for Biotechnology Information. Download Stephen F. Altschul PDFs here.

DOI: 10.1002/(sici)1097-0134(19980701)32:1<88::aid-prot10>3.0.co;2-j
·
1998
Cited 65 times
Generalized affine gap costs for protein sequence alignment
Stephen F. Altschul
DOI: 10.1002/pro.5560031117
·
1994
Cited 133 times
Eukaryotic translation elongation factor 1γ contains a glutathione transferase domain-Study of a diverse, ancient protein super family using motif search and structural modeling
Stephen F. Altschul
DOI: 10.1002/prot.340090304
·
1991
Cited 971 times
A workbench for multiple alignment construction and analysis
Stephen F. Altschul
DOI: 10.1007/978-1-4615-5903-0_1
·
1997
Cited 30 times
Evaluating the Statistical Significance of Multiple Distinct Local Alignments
Stephen F. Altschul
DOI: 10.1007/978-3-642-27848-8_207-2
·
2015
Local Alignment (with Affine Gap Weights)
Stephen F. Altschul
DOI: 10.1007/bf00160485
·
1993
Cited 137 times
A protein alignment scoring system sensitive at all evolutionary distances
Stephen F. Altschul
DOI: 10.1007/bf02462326
·
1986
Cited 183 times
Optimal sequence alignment using affine gap costs
Stephen F. Altschul
DOI: 10.1007/bf02462327
·
1986
Cited 48 times
A nonlinear measure of subalignment similarity and its significance levels
Stephen F. Altschul
DOI: 10.1016/0022-2836(89)90234-9
·
1989
Cited 163 times
Weights for data related by a tree
Stephen F. Altschul
DOI: 10.1016/0022-2836(91)90193-a
·
1991
Cited 577 times
Amino acid substitution matrices from an information theoretic perspective
Stephen F. Altschul
DOI: 10.1016/0959-440x(95)80082-4
·
1995
Cited 148 times
Statistics of sequence-structure threading
Stephen F. Altschul
DOI: 10.1016/s0022-2836(05)80360-2
·
1990
Cited 71,750 times
Basic local alignment search tool
Stephen F. Altschul
DOI: 10.1016/s0022-5193(89)80196-1
·
1989
Cited 123 times
Gap costs for multiple sequence alignment
Stephen F. Altschul
DOI: 10.1016/s0076-6879(96)66029-7
·
1996
Cited 676 times
[27] Local alignment statistics
Stephen F. Altschul
DOI: 10.1016/s0092-8240(86)90012-1
·
1986
Cited 28 times
Locally optimal subalignments using nonlinear similarity functions
Stephen F. Altschul
DOI: 10.1016/s0092-8240(88)90017-1
·
1988
Cited 8 times
Significance levels for biological sequence comparison using non-linear similarity functions
Stephen F. Altschul
DOI: 10.1016/s0166-6851(02)00278-5
·
2003
Cited 31 times
Expression of a recombinant IRP-like Plasmodium falciparum protein that specifically binds putative plasmodial IREs
Stephen F. Altschul
DOI: 10.1016/s0167-7799(98)00127-9
·
1998
Cited 6 times
Fundamentals of database searching
Stephen F. Altschul
DOI: 10.1016/s0968-0004(98)01298-5
·
1998
Cited 614 times
Iterated profile searches with PSI-BLAST—a tool for discovery in protein databases
Stephen F. Altschul
DOI: 10.1016/s1046-2023(05)80165-3
·
1991
Cited 144 times
Improved sensitivity of nucleic acid database searches using application-specific scoring matrices
Stephen F. Altschul
DOI: 10.1038/nbt.2721
·
2013
Cited 26 times
The anatomy of successful computational biology software
Stephen F. Altschul
DOI: 10.1038/nbt0614-592b
·
2014
Erratum: The anatomy of successful computational biology software
Stephen F. Altschul
DOI: 10.1038/ng0294-119
·
1994
Cited 723 times
Issues in searching molecular sequence databases
Stephen F. Altschul
DOI: 10.1038/ng0796-266
·
1996
Cited 339 times
…Functional motifs…
Stephen F. Altschul
DOI: 10.1038/s41598-019-55118-6
·
2020
Cited 10 times
Deep Analysis of Residue Constraints (DARC): identifying determinants of protein functional specificity
Stephen F. Altschul
DOI: 10.1073/pnas.242603899
·
2002
Cited 1,559 times
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Stephen F. Altschul
DOI: 10.1073/pnas.2533904100
·
2003
Cited 81 times
The compositional adjustment of amino acid substitution matrices
Stephen F. Altschul
DOI: 10.1073/pnas.86.12.4412
·
1989
Cited 446 times
A tool for multiple sequence alignment.
Stephen F. Altschul
DOI: 10.1073/pnas.87.14.5509
·
1990
Cited 422 times
Protein database searches for multiple alignments.
Stephen F. Altschul
DOI: 10.1073/pnas.87.6.2264
·
1990
Cited 1,388 times
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
Stephen F. Altschul
DOI: 10.1073/pnas.90.12.5873
·
1993
Cited 348 times
Applications and statistics for multiple high-scoring segments in molecular sequences.
Stephen F. Altschul
DOI: 10.1073/pnas.91.25.12091
·
1994
Cited 260 times
Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks.
Stephen F. Altschul
DOI: 10.1073/pnas.93.9.4345
·
1996
Cited 133 times
Differences in the RNA binding sites of iron regulatory proteins and potential target diversity.
Stephen F. Altschul
DOI: 10.1084/jem.188.9.1657
·
1998
Cited 108 times
Characterization of Gene Expression in Resting and Activated Mast Cells
Stephen F. Altschul
DOI: 10.1089/cmb.2010.0117
·
2010
Cited 8 times
Compositional Adjustment of Dirichlet Mixture Priors
Stephen F. Altschul
DOI: 10.1089/cmb.2011.0039
·
2011
Cited 4 times
The Complexity of the Dirichlet Model for Multiple Alignment Data
Stephen F. Altschul
DOI: 10.1089/cmb.2011.0040
·
2011
Cited 5 times
On the Inference of Dirichlet Mixture Priors for Protein Sequence Comparison
Stephen F. Altschul
DOI: 10.1089/cmb.2012.0244
·
2013
Cited 19 times
Dirichlet Mixtures, the Dirichlet Process, and the Structure of Protein Space
Stephen F. Altschul
DOI: 10.1089/cmb.2017.0050
·
2017
Cited 7 times
Initial Cluster Analysis
Stephen F. Altschul
DOI: 10.1093/bioinformatics/15.12.1000
·
1999
Cited 279 times
IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices
Stephen F. Altschul
DOI: 10.1093/bioinformatics/btab374
·
2021
eCOMPASS: evaluative comparison of multiple protein alignments by statistical score
Stephen F. Altschul
DOI: 10.1093/bioinformatics/bti070
·
2005
Cited 90 times
The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions
Stephen F. Altschul
DOI: 10.1093/bioinformatics/bti233
·
2005
Cited 21 times
A structure-based method for protein sequence alignment
Stephen F. Altschul
DOI: 10.1093/bioinformatics/btn171
·
2008
Cited 7 times
The effectiveness of position- and composition-specific gap costs for protein similarity searches
Stephen F. Altschul
DOI: 10.1093/bioinformatics/btr565
·
2011
Cited 10 times
An assessment of substitution scores for protein profile–profile comparison
Stephen F. Altschul
DOI: 10.1093/bioinformatics/btu634
·
2015
Cited 10 times
Log-odds sequence logos
Stephen F. Altschul
DOI: 10.1093/nar/25.17.3389
·
1997
Cited 64,067 times
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Stephen F. Altschul
DOI: 10.1093/nar/26.17.3986
·
1998
Cited 301 times
Protein sequence similarity searches using patterns as seeds
Stephen F. Altschul
DOI: 10.1093/nar/29.14.2994
·
2001
Cited 1,196 times
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
Stephen F. Altschul
DOI: 10.1093/nar/29.2.351
·
2001
Cited 170 times
The estimation of statistical parameters for local alignment score distributions
Stephen F. Altschul
DOI: 10.1093/nar/gkl731
·
2006
Cited 56 times
Retrieval accuracy, statistical significance and compositional similarity in protein sequence database searches
Stephen F. Altschul
DOI: 10.1093/nar/gkn981
·
2009
Cited 104 times
PSI-BLAST pseudocounts and the minimum description length principle
Stephen F. Altschul
DOI: 10.1093/oxfordjournals.molbev.a040370
·
1985
Cited 81 times
Significance of nucleotide sequence alignments: a method for random sequence permutation that preserves dinucleotide and codon usage.
Stephen F. Altschul
DOI: 10.1096/fasebj.11.1.9034168
·
1997
Cited 688 times
A superfamily of conserved domains in DNA damage‐ responsive cell cycle checkpoint proteins
Stephen F. Altschul
DOI: 10.1101/334540
·
2018
Statistical Investigations of Protein Residue Direct Couplings
Stephen F. Altschul
DOI: 10.1101/gr.10.7.1051
·
2000
Cited 394 times
SAGEmap: A Public Gene Expression Resource
Stephen F. Altschul
DOI: 10.1109/iccd.1991.139959
·
1991
Cited 26 times
BioSCAN: a VLSI-based system for biosequence analysis
Stephen F. Altschul
DOI: 10.1111/j.1742-4658.2005.04945.x
·
2005
Cited 840 times
Protein database searches using compositionally adjusted substitution matrices
Stephen F. Altschul
DOI: 10.11234/gi1990.4.459
·
1993
SCORING SYSTEMS FOR MACROMOLECULAR SEQUENCE COMPARISON
Stephen F. Altschul
DOI: 10.1126/science.1651562
·
1991
Cited 2,134 times
Identification of FAP Locus Genes from Chromosome 5q21
Stephen F. Altschul
DOI: 10.1126/science.8211139
·
1993
Cited 1,723 times
Detecting Subtle Sequence Signals: a Gibbs Sampling Strategy for Multiple Alignment
Stephen F. Altschul
DOI: 10.1128/jb.171.2.1211-1213.1989
·
1989
Cited 8 times
Evolutionary trees for the genus Bordetella
Stephen F. Altschul
DOI: 10.1137/0402025
·
1989
Cited 7 times
Leaf Pairs and Tree Dissections
Stephen F. Altschul
DOI: 10.1146/annurev.bb.20.060191.001135
·
1991
Cited 85 times
Statistical Methods and Insights for Protein and DNA Sequences
Stephen F. Altschul
DOI: 10.1186/1741-7007-4-41
·
2006
Cited 326 times
Composition-based statistics and translated nucleotide searches: Improving the TBLASTN module of BLAST
Stephen F. Altschul
DOI: 10.1186/1745-6150-7-12
·
2012
Cited 592 times
Domain enhanced lookup time accelerated BLAST
Stephen F. Altschul
DOI: 10.1186/s13015-018-0126-3
·
2018
Cited 11 times
Outlier detection in BLAST hits
Stephen F. Altschul
DOI: 10.1371/journal.pcbi.1000852
·
2010
Cited 55 times
The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment
Stephen F. Altschul
DOI: 10.1371/journal.pcbi.1004936
·
2016
Cited 16 times
Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties
Stephen F. Altschul
DOI: 10.1371/journal.pcbi.1005294
·
2016
Cited 7 times
Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations
Stephen F. Altschul
DOI: 10.1371/journal.pcbi.1006237
·
2018
Cited 7 times
Statistical investigations of protein residue direct couplings
Stephen F. Altschul
DOI: 10.4230/lipics.wabi.2017.23
·
2017
Outlier Detection in BLAST Hits
Stephen F. Altschul
DOI: 10.7554/elife.29880
·
2018
Cited 12 times
Inferring joint sequence-structural determinants of protein functional specificity
Stephen F. Altschul
DOI: 10.7554/elife.29880.030
·
2017
Author response: Inferring joint sequence-structural determinants of protein functional specificity
Stephen F. Altschul
MAG: 2122872071
·
1999
Cited 172 times
A public database for gene expression in human cancers.
Stephen F. Altschul
MAG: 2186157625
·
1993
Detecting SubtleSequence Signals:.A Gibbs Sampling StrategyforMultiple Alignment
Stephen F. Altschul
MAG: 2412496466
·
1987
Aspects of biological sequence comparison
Stephen F. Altschul
MAG: 2784165177
·
1985
Significance of dna or rna sequence alignments random permutation methods that preserve dinucleotide trinucleotide or dinucleotide and codon usage
Stephen F. Altschul
MAG: 3014498635
·
2004
The Compositional Adjustment of Amino Acid Substitution Matrices
Stephen F. Altschul
MAG: 3131765407
·
2003
Background frequency, information content, and the scoring matrix in sequence alignment
Stephen F. Altschul
MAG: 3143191975
·
1994
A Gibbs Sampler for the Detection of Subtle Motifs in Multiple Sequences
Stephen F. Altschul