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Webb Miller

Pennsylvania State University

DOI: 10.1038/s41598-020-69101-z
Scientific Reports ·
2020
Cited 7 times
STAGdb: a 30K SNP genotyping array and Science Gateway for Acropora corals and their dinoflagellate symbionts.
Sheila A. Kitchen, G. Von Kuster, K. L. Vasquez Kuntz, Hannah G. Reich, Webb Miller, S. Griffin, Nicole D. Fogarty, Iliana B. Baums
Coral reef
Coral
Genome
DOI: 10.1093/gbe/evz279
Genome Biology and Evolution ·
2020
Cited 6 times
Functional architecture of deleterious genetic variants in the genome of a Wrangel Island mammoth.
Erin Fry, Sun K. Kim, Sravanthi Chigurapti, Katelyn Mika, Aakrosh Ratan, Alexander Dammermann, Brian J. Mitchell, Webb Miller, Vincent J. Lynch
Biology
Mammoth
Evolutionary biology
DOI: 10.1101/2020.01.21.914424
bioRxiv ·
2020
STAGdb: a 30K SNP genotyping array and Science Gateway for Acropora corals and their dinoflagellate symbionts
Sheila A. Kitchen, G. Von Kuster, K. L. Vasquez Kuntz, Hannah G. Reich, Webb Miller, S. Griffin, Nicole D. Fogarty, Iliana B. Baums
Biology
Acropora
Symbiodinium
MAG: 3217138381
The 89th Annual Meeting of the American Association of Physical Anthropologists, Los Angeles, CA ·
2020
Evolutionary and phylogenetic insights from a nuclear genome of the extinct giant koala lemur Megaladapis edwardsi
Stephanie Marciniak, Mehreen R. Mughal, Laurie R. Godfrey, Christina M. Bergey, Richard J. Bankoff, Heritiana Randrianatoandro, Brooke E. Crowley, Kathleen M. Muldoon, Webb Miller, Stephan C. Schuster, Ripan S Mahli, Anne D. Yoder, Edward E. Louis, Logan Kistler, George H. Perry
DOI: 10.1534/g3.119.400125
G3: Genes, Genomes, Genetics ·
2019
Cited 18 times
Genomic Variants Among Threatened Acropora Corals
Sheila A. Kitchen, Aakrosh Ratan, Oscar C. Bedoya-Reina, Richard Burhans, Nicole D. Fogarty, Webb Miller, Iliana B. Baums
Coral
Ecology
Scleractinia
DOI: 10.1101/397356
bioRxiv ·
2018
Relaxed constraint and thermal desensitization of the cold-sensing ion channel TRPM8 in mammoths
Chigurapati S, Michael Sulak, Webb Miller, Vincent J. Lynch
TRPM8
Ion channel
Biophysics
DOI: 10.1101/349910
bioRxiv ·
2018
Genomic variants among threatened Acropora corals
Sheila A. Kitchen, Aakrosh Ratan, Oscar C. Bedoya-Reina, Richard Burhans, Nicole D. Fogarty, Webb Miller, Iliana B. Baums
Biology
Acropora
Threatened species
DOI: 10.1101/137455
bioRxiv ·
2018
Cited 3 times
Functional architecture of deleterious genetic variants in the Wrangel Island mammoth genome
Erin Fry, Sun K. Kim, Sravanthi Chigurapti, Katelyn Mika, Aakrosh Ratan, Alexander Dammermann, Brian J. Mitchell, Webb Miller, Vincent J. Lynch
Gene
Genomics
DNA sequencing
DOI: 10.1186/s12954-017-0188-4
Harm Reduction Journal ·
2017
Cited 10 times
Characteristics of persons who inject drugs and who witness opioid overdoses in Vietnam: a cross-sectional analysis to inform future overdose prevention programs.
Natalie A. Blackburn, Kathryn E. Lancaster, Tran Viet Ha, Carl A. Latkin, Webb Miller, Constantine Frangakis, Viet Anh Chu, Teerada Sripaipan, Vu Minh Quan, N.L. Minh, P.T. Vu, Vivian F. Go
Opioid overdose
Harm reduction
Public health
DOI: 10.1101/137455
bioRxiv ·
2017
Accumulation And Functional Architecture Of Deleterious Genetic Variants During The Extinction Of Wrangel Island Mammoths
Erin Fry, Sun K. Kim, Sravanthi Chigurapti, Katelyn Mika, Aakrosh Ratan, Alexander Dammermann, Brian J. Mitchell, Webb Miller, Vincent J. Lynch
Extinction (optical mineralogy)
Evolutionary biology
DOI: 10.1016/j.bbrc.2016.04.052
Biochemical and Biophysical Research Communications ·
2016
Sex determination by SRY PCR and sequencing of Tasmanian devil facial tumour cell lines reveals non-allograft transmission
Xianlan Cui, Yunfeng Wang, Bobby Hua, Webb Miller, Yan Zhao, Hongyu Cui, Xiangang Kong
Testis determining factor
Biology
Polymerase chain reaction
DOI: 10.1038/ncomms11519
Nature Communications ·
2016
Cited 35 times
Giraffe genome sequence reveals clues to its unique morphology and physiology
Morris Agaba, Edson Ishengoma, Webb Miller, Barbara C. McGrath, Chelsea N. Hudson, Oscar C. Bedoya Reina, Aakrosh Ratan, Rico Burhans, Rayan Chikhi, Paul Medvedev, Craig A. Praul, Lan Wu-Cavener, Brendan Wood, Heather Robertson, Linda M. Penfold, Douglas R. Cavener
Genetics
Phylogenetic tree
Morphology (biology)
DOI: 10.1101/047498
bioRxiv ·
2016
Cited 5 times
Genome-wide evidence for a hybrid origin of modern polar bears
Tianying Lan, Jade Yu Cheng, Aakrosh Ratan, Webb Miller, Stephan C. Schuster, Sean D. Farley, Shideler Rt, Thomas Mailund, Charlotte Lindqvist
Genome
Biology
Evolutionary biology
MAG: 2340118742
Plant and Animal Genome XXIV Conference ·
2016
Cited 3 times
Whole genome sequencing of California condors is now utilized for guiding genetic management
Oliver A. Ryder, Webb Miller, Katherine Ralls, Jonathan D. Ballou, Cynthia C. Steiner, Anna Mitelberg, Michael N Romanov, Leona G. Chemnick, Michael Mace, Stephan C. Schuster
Biology
Genome
Wildlife
MAG: 2472766040
·
2016
The Use of Genetic Databases in Population Screening Programs for Hemoglobinopathies
George P. Patrinos, Belinda Giardine, Cathy Riemer, Webb Miller, Chui Dhk, Anagnou Np, Tadmouri Go, Gulen Ri
Medicine
Thalassemia
Population
DOI: 10.1016/j.celrep.2015.06.027
Cell Reports ·
2015
Cited 85 times
Elephantid Genomes Reveal the Molecular Bases of Woolly Mammoth Adaptations to the Arctic
Vincent J. Lynch, Oscar C. Bedoya-Reina, Aakrosh Ratan, Michael Sulak, Daniela I. Drautz-Moses, George H. Perry, Webb Miller, Stephan C. Schuster
Evolutionary biology
Mitochondrial DNA
DNA sequencing
DOI: 10.1186/s12864-015-1712-0
BMC Genomics ·
2015
Cited 29 times
Genome-wide analysis of signatures of selection in populations of African honey bees (Apis mellifera) using new web-based tools
Zachary L. Fuller, Elina L. Niño, Harland M. Patch, Oscar C. Bedoya-Reina, Tracey Baumgarten, Elliud Muli, F.N. Mumoki, Aakrosh Ratan, John J. McGraw, Maryann Frazier, Daniel K. Masiga, Stephen C. Schuster, Christina M. Grozinger, Webb Miller
Honey bee
Genome
Genetics
DOI: 10.1101/018366
bioRxiv ·
2015
Elephantid genomes reveal the molecular bases of Woolly Mammoth adaptations to the arctic
Vincent J. Lynch, Oscar C. Bedoya-Reina, Aakrosh Ratan, Michael Sulak, Daniela I. Drautz-Moses, George H. Perry, Webb Miller, Stephan C. Schuster
Biology
Genome
Evolutionary biology
DOI: 10.1186/s12859-015-0483-6
BMC Bioinformatics ·
2015
Cited 34 times
Identification of indels in next-generation sequencing data
Aakrosh Ratan, Thomas L. Olson, Thomas P. Loughran, Webb Miller
Computer science
Computational biology
Identification (biology)
DOI: 10.1016/j.jhevol.2014.06.016
Journal of Human Evolution ·
2015
Cited 71 times
Comparative and population mitogenomic analyses of Madagascar's extinct, giant 'subfossil' lemurs.
Logan Kistler, Aakrosh Ratan, Laurie R. Godfrey, Brooke E. Crowley, Cris E. Hughes, Runhua Lei, Yinqiu Cui, Mindy L. Wood, Kathleen M. Muldoon, Haingoson Andriamialison, John J. McGraw, Lynn P. Tomsho, Stephan C. Schuster, Webb Miller, Edward E. Louis, Anne D. Yoder, Ripan S. Malhi, George H. Perry
Lemur
Subfossil
Biology
MAG: 3172516730
The 84th Annual Meeting of the American Association of Physical Anthropologists, St. Louis, MO ·
2015
Nuclear genome sequences from the extinct subfossil lemurs Palaeopropithecus ingens and Megaladapis edwardsi
George Perry, Logan Kistler, Laurie R. Godfrey, Brooke E. Crowley, Kathleen M. Muldoon, Ripan S. Malhi, Stephan C. Schuster, Webb Miller, Anne D. Yoder, Edward E. Louis
Biology
Lemur
Zoology
DOI: 10.1038/ncomms6692
Nature Communications ·
2014
Cited 55 times
Khoisan hunter-gatherers have been the largest population throughout most of modern-human demographic history.
Hie Lim Kim, Aakrosh Ratan, George H. Perry, Alvaro Montenegro, Webb Miller, Stephan C. Schuster
Geography
Demography
History
DOI: 10.1093/gbe/evu025
Genome Biology and Evolution ·
2014
Cited 45 times
Polar bears exhibit genome-wide signatures of bioenergetic adaptation to life in the arctic environment.
Andreanna J. Welch, Oscar C. Bedoya-Reina, Lorenzo Carretero-Paulet, Webb Miller, Karyn D. Rode, Charlotte Lindqvist
Arctic
Adaptation (eye)
Ecology
MAG: 2236118579
Plant and Animal Genome XXII Conference ·
2014
Supporting California condor conservation management through analysis of species-wide whole genome sequence variation
Oliver A. Ryder, Leona G. Chemnick, Steven M. Thomas, Jessica Martin, Michael N Romanov, Katherine Ralls, Jonathan D. Ballou, Michael Mace, Aakrosh Ratan, Webb Miller, Stephan C. Schuster
Biology
Genome
Sequence (biology)
DOI: 10.1093/nar/gkt911
Nucleic Acids Research ·
2014
Cited 302 times
Updates of the HbVar database of human hemoglobin variants and thalassemia mutations
Belinda Giardine, Joseph Borg, Emmanouil Viennas, Cristiana Pavlidis, Kamran Moradkhani, Philippe Joly, Marina Bartsakoulia, Cathy Riemer, Webb Miller, Giannis Tzimas, Henri Wajcman, Ross C. Hardison, George P. Patrinos
Gene
Mutation
Hemoglobin