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Warren Gish

Washington University in St. Louis

DOI: 10.1371/journal.pone.0001246
PLOS ONE ·
2007
Cited 17 times
An intronic signal for alternative splicing in the human genome.
Necat Havlioglu, Jun-Jun Wang, Kazuo Fushimi, Maria D. Vibranovski, Zhengyan Kan, Warren Gish, Alexei Fedorov, Manyuan Long, Jane Y. Wu
RNA splicing
Biology
Alternative splicing
MAG: 2414995197
·
2007
An Intronic Signal for Alternative Splicing in the Human
Genome Havlioglu, Jun Wang, Kazuo Fushimi, Maria D. Vibranovski, Zhengyan Kan, Warren Gish, Alexei Fedorov, Manyuan Long, Jane Y. Wu
RNA splicing
Alternative splicing
Splicing factor
DOI: 10.1093/bioinformatics/bti748
Bioinformatics ·
2006
Cited 34 times
Improved spliced alignment from an information theoretic approach
Miao Zhang, Warren Gish
Computer science
Computational biology
Data mining
DOI: 10.1101/gr.2584104
Genome Research ·
2004
Cited 140 times
An ORFeome-based Analysis of Human Transcription Factor Genes and the Construction of a Microarray to Interrogate Their Expression
David N. Messina, Jarret Glasscock, Warren Gish, Michael Lovett
Biology
Genetics
Gene
DOI: 10.1038/nature01782
Nature ·
2003
Cited 234 times
The DNA sequence of human chromosome 7
LaDeana W. Hillier, Robert S. Fulton, Lucinda Fulton, Tina Graves, Kymberlie H. Pepin, Caryn Wagner-McPherson, Dan Layman, Jason Maas, Sara Jaeger, Rebecca S. Walker, Kristine M. Wylie, Mandeep Sekhon, Michael C. Becker, Michelle O'Laughlin, Mark E. Schaller, Ginger A. Fewell, Kimberly D. Delehaunty, Tracie L. Miner, William E. Nash, Matt Cordes, Hui Du, Hui Sun, Jennifer Edwards, Holland Bradshaw-Cordum, Johar Ali, Stephanie Andrews, Amber Isak, Andrew Vanbrunt, Christine Nguyen, Feiyu Du, Betty Lamar, Laura Courtney, Joelle Kalicki, Philip Ozersky, Lauren Bielicki, Kelsi Scott, Andrea Holmes, Richard Harkins, Anthony R. Harris, Cindy Strong, Shunfang Hou, Chad Tomlinson, Sara Dauphin-Kohlberg, Amy Kozlowicz-Reilly, Shawn Leonard, Theresa Rohlfing, Susan M. Rock, Aye-Mon Tin-Wollam, Amanda Abbott, Patrick Minx, Rachel Maupin, Catrina Strowmatt, Phil Latreille, Nancy Miller, Doug Johnson, Jennifer Murray, Jeffrey Woessner, Michael C. Wendl, Shiaw-Pyng Yang, Brian Schultz, John W. Wallis, John Spieth, Tamberlyn Bieri, Joanne O. Nelson, Nicolas Berkowicz, Patricia Wohldmann, Lisa Cook, Matthew T. Hickenbotham, James M. Eldred, Donald Williams, Joseph A. Bedell, Elaine R. Mardis, Sandra W. Clifton, Stephanie L. Chissoe, Marco A. Marra, Christopher K. Raymond, Eric Haugen, Will Gillett, Yang Zhou, R. James, Karen A. Phelps, Shawn Iadanoto, Kerry L. Bubb, Elizabeth Simms, Ruth Levy, James B. Clendenning, Rajinder Kaul, W. James Kent, Terrence S. Furey, Robert Baertsch, Michael R. Brent, Evan Keibler, Paul Flicek, Peer Bork, Mikita Suyama, Jeffrey A. Bailey, Matthew E. Portnoy, David Torrents, Asif T. Chinwalla, Warren Gish
DNA
Chromosome
DNA sequencing
DOI: 10.1093/nar/gkg573
Nucleic Acids Research ·
2003
Cited 121 times
WU-Blast2 server at the European Bioinformatics Institute
Rodrigo Lopez, Ville Silventoinen, Stephen J. Robinson, Asif Kibria, Warren Gish
Computational biology
Web server
Library science
DOI: 10.1101/gr.764102
Genome Research ·
2002
Cited 175 times
Selecting for Functional Alternative Splices in ESTs
Zhengyan Kan, David J. States, Warren Gish
Computational biology
splice
DOI: 10.1093/nar/gkf633
Nucleic Acids Research ·
2002
Cited 14 times
Comparison of whole genome assemblies of the human genome
Eric C. Rouchka, Warren Gish, David J. States
Biology
Genome
Computational biology
MAG: 2527321872
·
2002
Assembly and compositional analysis of human genomic data
Eric C. Rouchka, David J. States, Warren Gish, Ron Cytron
Computational biology
Computer science
Genome
DOI: 10.1038/35087627
Nature ·
2001
Cited 53 times
Erratum: Initial sequencing and analysis of the human genome: International Human Genome Sequencing Consortium (Nature (2001) 409 (860-921))
Eric S. Lander, Lauren Linton, Bruce W. Birren, Chad Nusbaum, Michael C. Zody, Jennifer Baldwin, Keri Devon, Ken Dewar, Michael Doyle, William Fitzhugh, Roel Funke, Diane Gage, Katrina Harris, Andrew Heaford, John Howland, Lisa Kann, Jessica A. Lehoczky, Rosie Levine, Paul A. McEwan, Kevin McKernan, James Meldrim, Jill P. Mesirov, Cher Miranda, William Morris, Jerome Naylor, Christina Raymond, Mark Rosetti, Ralph Santos, Andrew Sheridan, Carrie Sougnez, Nicole Stange-Thomann, Nikola Stojanovic, Aravind Subramanian, Dudley Wyman, Jane Rogers, John Sulston, R Ainscough, Stephan Beck, David R. Bentley, John Burton, C M Clee, Nigel P. Carter, A. Coulson, Rebecca Deadman, Panos Deloukas, Andrew Dunham, Ian Dunham, Richard Durbin, Lisa French, Darren Grafham, Simon G. Gregory, Tim Hubbard, Sean Humphray, Adrienne Hunt, Matthew C. Jones, Christine Lloyd, Amanda McMurray, Lucy Matthews, Simon Mercer, Sarah Milne, James C. Mullikin, Andrew J. Mungall, Robert W. Plumb, Mark T. Ross, Ratna Shownkeen, Sarah Sims, Robert H. Waterston, Richard K. Wilson, LaDeana W. Hillier, John Douglas Mcpherson, Marco A. Marra, Elaine R. Mardis, Lucinda Fulton, Asif T. Chinwalla, Kymberlie H. Pepin, Warren Gish, Stephanie L. Chissoe, Michael C. Wendl, Kim D. Delehaunty, Tracie L. Miner, Andrew Delehaunty, Jason B. Kramer, Lisa Cook, Robert S. Fulton, Douglas L. Johnson, Patrick Minx, Sandra W. Clifton, Trevor Hawkins, Elbert Branscomb, Paul Predki, Paul G. Richardson, Sarah Wenning, Tom Slezak, Norman A. Doggett, Jan Fang Cheng, Anne S. Olsen, Susan Lucas, Christopher J. Elkin, Edward Uberbacher, Marvin Frazier
Genome
DNA sequencing
Whole genome sequencing
DOI: 10.1101/gr.182901
Genome Research ·
2001
Cited 233 times
Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis.
Paul F. Cliften, LaDeana W. Hillier, Lucinda Fulton, Tina Graves, Tracie L. Miner, Warren Gish, Robert H. Waterston, Mark Johnston
Biology
Genetics
Gene
DOI: 10.1038/88878
Nature Genetics ·
2001
Cited 613 times
Rapid gene mapping in Caenorhabditis elegans using a high density polymorphism map
Stephen R. Wicks, Raymond T. Yeh, Warren Gish, Robert H. Waterston, Ronald H.A. Plasterk
Caenorhabditis elegans
Gene
Population
DOI: 10.1101/gr.155001
Genome Research ·
2001
Cited 377 times
Gene structure prediction and alternative splicing analysis using genomically aligned ESTs.
Zhengyan Kan, Eric C. Rouchka, Warren Gish, David J. States
RNA splicing
Computational biology
Genomics
DOI: 10.1038/35057062
Nature ·
2001
Cited 19,965 times
Initial sequencing and analysis of the human genome.
Eric S. Lander, Lauren Linton, Bruce W. Birren, Chad Nusbaum, Michael C. Zody, Jennifer Baldwin, Keri Devon, Ken Dewar, Michael Doyle, William Fitzhugh, Roel Funke, Diane Gage, Katrina Harris, Andrew Heaford, John Howland, Lisa Kann, Jessica A. Lehoczky, Rosie Levine, Paul A. McEwan, Kevin McKernan, James Meldrim, Jill P. Mesirov, Cher Miranda, William Morris, Jerome Naylor, Christina Raymond, Mark Rosetti, Ralph Santos, Andrew Sheridan, Carrie Sougnez, Nicole Stange-Thomann, Nikola Stojanovic, Aravind Subramanian, Dudley Wyman, Jane Rogers, John Sulston, R Ainscough, Stephan Beck, David Bentley, John Burton, C M Clee, Nigel P. Carter, Alan Coulson, Rebecca Deadman, Panos Deloukas, Andrew Dunham, Ian Dunham, Richard Durbin, Lisa French, Darren Grafham, Simon G. Gregory, Tim Hubbard, Sean Humphray, Adrienne Hunt, Matthew Jones, Christine Lloyd, Amanda McMurray, Lucy Matthews, Simon Mercer, Sarah Milne, James C. Mullikin, Andrew J. Mungall, Robert W. Plumb, Mark T. Ross, Ratna Shownkeen, Sarah Sims, Robert H. Waterston, Richard K. Wilson, LaDeana W. Hillier, John Douglas Mcpherson, Marco A. Marra, Elaine R. Mardis, Lucinda Fulton, Asif T. Chinwalla, Kymberlie H. Pepin, Warren Gish, Stephanie L. Chissoe, Michael C. Wendl, Kim D. Delehaunty, Tracie L. Miner, Andrew Delehaunty, Jason B. Kramer, Lisa Cook, Robert S. Fulton, Douglas L. Johnson, Patrick Minx, Sandra W. Clifton, Trevor Hawkins, Elbert Branscomb, Paul Predki, Paul G. Richardson, Sarah Wenning, Tom Slezak, Norman A. Doggett, Jan Fang Cheng, Anne S. Olsen, Susan Lucas, Christopher J. Elkin, Edward Uberbacher, Marvin Frazier
Human genome
Genome
Sequence (biology)
DOI: 10.1093/bioinformatics/16.11.1040
Bioinformatics ·
2000
Cited 170 times
MaskerAid : a performance enhancement to RepeatMasker
Joseph A. Bedell, Ian F Korf, Warren Gish
Computer science
Source code
DOI: 10.1093/bioinformatics/16.11.1052
Bioinformatics ·
2000
Cited 24 times
MPBLAST : improved BLAST performance with multiplexed queries.
Ian F Korf, Warren Gish
Computer science
Algorithm
MAG: 1535356260
intelligent systems in molecular biology ·
2000
Cited 16 times
UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences
Zhengyan Kan, Warren Gish, Eric C. Rouchka, Jarret Glasscock, David J. States
Computer science
Computational biology
Biology
MAG: 2901887278
·
2000
Marth, G.T. et al. A general approach to single-nucleotide polymorphism discovery. Nat. Genet. 23, 452-456
Gabor T. Marth, Ian F Korf, Mark Yandell, Raymond T. Yeh, Zhijie Gu, Hamideh Zakeri, Nathan O. Stitziel, LaDeana W. Hillier, Kwok Py, Warren Gish
Biology
Nat
Genetics
DOI: 10.1038/70570
Nature Genetics ·
1999
Cited 504 times
A general approach to single-nucleotide polymorphism discovery
Gabor T. Marth, Ian F Korf, Mark Yandell, Raymond T. Yeh, Zhijie Gu, Hamideh Zakeri, Nathan O. Stitziel, LaDeana W. Hillier, Pui-Yan Kwok, Warren Gish
Single-nucleotide polymorphism
Gene
Polymorphism (computer science)
DOI: 10.1101/gr.6.9.807
Genome Research ·
1996
Cited 431 times
Generation and analysis of 280,000 human expressed sequence tags.
LaDeana W. Hillier, Gregory G. Lennon, Michael C. Becker, Bonaldo Mf, Chiapelli B, Stephanie L. Chissoe, Nicole Dietrich, DuBuque T, Anthony Favello, Warren Gish, Hawkins M, Hultman M, Tamara A. Kucaba, Lacy M, Le M, Le N, Elaine R. Mardis, Moore B, Morris M, J. Parsons, Prange C, Rifkin L, Tracy Rohlfing, Schellenberg K, Bento Soares M, Tan F, Thierry-Meg J, Trevaskis E, Underwood K, Wohldman P, Robert H. Waterston, Richard K. Wilson, Marco A. Marra
Genetics
Sequence (biology)
DNA sequencing
DOI: 10.1016/s0076-6879(96)66029-7
Methods in Enzymology ·
1996
Cited 662 times
Local alignment statistics.
Stephen F. Altschul, Warren Gish
Computational biology
Mathematics
DOI: 10.1038/ng0294-119
Nature Genetics ·
1994
Cited 709 times
Issues in searching molecular sequence databases.
Stephen F. Altschul, Mark S. Boguski, Warren Gish, John C. Wootton
Redundancy (engineering)
Biology
Sequence (biology)
DOI: 10.1089/cmb.1994.1.39
Journal of Computational Biology ·
1994
Cited 94 times
Combined use of sequence similarity and codon bias for coding region identification
David J. States, Warren Gish
Sequence (biology)
Genetics
Computer science
DOI: 10.1038/ng0393-266
Nature Genetics ·
1993
Cited 1,468 times
Identification of protein coding regions by database similarity search.
Warren Gish, David J. States
Biology
Sequence database
Sequence (biology)
DOI: 10.1016/s1046-2023(05)80165-3
Methods ·
1991
Cited 141 times
Improved Sensitivity of Nucleic Acid Database Searches Using Application-Specific Scoring Matrices
David J. States, Warren Gish, Stephen F. Altschul
Computer science
Database
DNA